Package: celda
 Title: CEllular Latent Dirichlet Allocation

 Version: 1.6.1

 Authors@R: c(person("Joshua", "Campbell", email = "camp@bu.edu",
     role = c("aut", "cre")),
     person("Sean", "Corbett", email = "scorbett@bu.edu", role = c("aut")),
     person("Yusuke", "Koga", email="ykoga07@bu.edu", role = c("aut")),
     person("Shiyi", "Yang", email="syyang@bu.edu", role = c("aut")),
     person("Eric", "Reed", email="reeder@bu.edu", role = c("aut")),
     person("Zhe", "Wang", email="zhe@bu.edu", role = c("aut")))

 Description: Utilizing Bayesian hierarchical models to analyze single-cell genomic data.

 Depends: R (>= 3.6)

 VignetteBuilder: knitr

 Imports: plyr, foreach, ggplot2, RColorBrewer, grid, scales, gtable,

         grDevices, graphics, matrixStats, doParallel, digest, methods,
         reshape2, MAST, S4Vectors, data.table,

         Rcpp, RcppEigen, uwot, enrichR, stringi, SummarizedExperiment,
         MCMCprecision, ggrepel, Rtsne, withr, dendextend, ggdendro,
         pROC, scater (>= 1.14.4), scran, SingleCellExperiment, dbscan,

         DelayedArray, Seurat, stringr, Matrix, ComplexHeatmap, multipanelfigure,
         circlize
 Suggests: testthat, knitr, roxygen2, rmarkdown, biomaRt, covr,

         BiocManager, BiocStyle, M3DExampleData, TENxPBMCData
 LinkingTo: Rcpp, RcppEigen

 License: MIT + file LICENSE

 Encoding: UTF-8

 LazyData: true

 RoxygenNote: 7.1.1

 BugReports: https://github.com/campbio/celda/issues

 biocViews: SingleCell, GeneExpression, Clustering, Sequencing, Bayesian

 NeedsCompilation: yes