Package: cbaf biocViews: Software, AssayDomain, DNAMethylation, GeneExpression, Transcription, Microarray,ResearchField, BiomedicalInformatics, ComparativeGenomics, Epigenetics, Genetics, Transcriptomics Title: Automated functions for comparing various omic data from cbioportal.org Version: 1.29.0 Authors@R: c(person("Arman", "Shahrisa", role = c("aut", "cre", "cph"), email = "shahrisa.arman@hotmail.com"), person("Maryam", "Tahmasebi Birgani", role = "aut", email = "tahmasebi-ma@ajums.ac.ir")) Description: This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org. Depends: R (>= 4.1) License: Artistic-2.0 Encoding: UTF-8 LazyData: true Imports: BiocFileCache, RColorBrewer, cBioPortalData, genefilter, gplots, grDevices, stats, utils, openxlsx, zip NeedsCompilation: no RoxygenNote: 7.3.1 Suggests: knitr, rmarkdown, BiocStyle VignetteBuilder: knitr Collate: 'cbaf-obtainMultipleStudies.R' 'cbaf-obtainOneStudy.R' 'cbaf-automatedStatistics.R' 'cbaf-availableData.R' 'cbaf-cleanDatabase.R' 'cbaf-constants.R' 'cbaf-heatmapOutput.R' 'cbaf-processMultipleStudies.R' 'cbaf-processOneStudy.R' 'cbaf-xlsxOutput.R' 'zzz.R'