Package: cbaf
biocViews: Software, AssayDomain, DNAMethylation, GeneExpression, Transcription, Microarray,ResearchField, BiomedicalInformatics, ComparativeGenomics, Epigenetics, Genetics, Transcriptomics
Title: Automated functions for comparing various omic data from cbioportal.org
Version: 1.29.0
Authors@R: c(person("Arman", "Shahrisa", role = c("aut", "cre", "cph"),
                     email = "shahrisa.arman@hotmail.com"),
            person("Maryam", "Tahmasebi Birgani", role = "aut",
                     email = "tahmasebi-ma@ajums.ac.ir"))
Description: This package contains functions that allow analysing and comparing 
             omic data across various cancers/cancer subgroups easily. So far, 
             it is compatible with RNA-seq, microRNA-seq, microarray and 
             methylation datasets that are stored on cbioportal.org.
Depends: R (>= 4.1)
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Imports: BiocFileCache, RColorBrewer, cBioPortalData, genefilter, gplots, 
         grDevices, stats, utils, openxlsx, zip
NeedsCompilation: no
RoxygenNote: 7.3.1
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
Collate: 
    'cbaf-obtainMultipleStudies.R'
    'cbaf-obtainOneStudy.R'
    'cbaf-automatedStatistics.R'
    'cbaf-availableData.R'
    'cbaf-cleanDatabase.R'
    'cbaf-constants.R'
    'cbaf-heatmapOutput.R'
    'cbaf-processMultipleStudies.R'
    'cbaf-processOneStudy.R'
    'cbaf-xlsxOutput.R'
    'zzz.R'