1. bsseq
  2. .travis.yml
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travis

Kasper Daniel Hansen authored on 16/10/2017 21:26:01
Showing 1 changed files
.travis.yml
History View file @ 5701692
... ... 
@@ -7,3 +7,8 @@ r_github_packages:
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   - jimhester/covr
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 after_success:
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   - Rscript -e 'covr::codecov()'
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+before_install:
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+  - tlmgr install bera
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+  - tlmgr install nowidow
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+  - tlmgr install parnotes
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+  - tlmgr install marginfix
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travis

Kasper Daniel Hansen authored on 16/10/2017 21:14:23
Showing 1 changed files
.travis.yml
History View file @ 5876a4b
... ... 
@@ -7,8 +7,3 @@ r_github_packages:
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   - jimhester/covr
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 after_success:
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   - Rscript -e 'covr::codecov()'
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-before_install:
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-  - tlmgr install bera
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-  - tlmgr install nowidow
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-  - tlmgr install parnotes
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-  - tlmgr install marginfix
Browse code

travis

Kasper Daniel Hansen authored on 16/10/2017 20:04:25
Showing 1 changed files
.travis.yml
History View file @ e35d808
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@@ -1,4 +1,4 @@
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-language: R
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+language: r
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 r: bioc-devel
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 sudo: false
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 cache: packages
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updating travis

Kasper Daniel Hansen authored on 16/10/2017 19:59:10
Showing 1 changed files
.travis.yml
History View file @ 4239b17
... ... 
@@ -1,4 +1,4 @@
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-language: r
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+language: R
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 r: bioc-devel
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 sudo: false
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 cache: packages
Browse code

updating travis

Kasper Daniel Hansen authored on 16/10/2017 19:54:43
Showing 1 changed files
.travis.yml
History View file @ cd7c718
... ... 
@@ -3,6 +3,8 @@ r: bioc-devel
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 sudo: false
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 cache: packages
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 warnings_are_errors: false
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+r_github_packages:
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+  - jimhester/covr
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 after_success:
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   - Rscript -e 'covr::codecov()'
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 before_install:
Browse code

minor things in travis:

Kasper Daniel Hansen authored on 16/10/2017 19:36:26
Showing 1 changed files
.travis.yml
History View file @ dcb2ffd
... ... 
@@ -1,4 +1,4 @@
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-language: R
1 
+language: r
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 r: bioc-devel
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 sudo: false
4 4 
 cache: packages
... ... 
@@ -10,4 +10,3 @@ before_install:
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   - tlmgr install nowidow
11 11 
   - tlmgr install parnotes
12 12 
   - tlmgr install marginfix
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-
Browse code

updating travis

Kasper Daniel Hansen authored on 16/10/2017 19:30:47
Showing 1 changed files
.travis.yml
History View file @ a4501cc
... ... 
@@ -5,3 +5,9 @@ cache: packages
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 warnings_are_errors: false
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 after_success:
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   - Rscript -e 'covr::codecov()'
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+before_install:
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+  - tlmgr install bera
10 
+  - tlmgr install nowidow
11 
+  - tlmgr install parnotes
12 
+  - tlmgr install marginfix
13 
+
Browse code

updating travis.yml

Kasper Daniel Hansen authored on 16/10/2017 19:27:18
Showing 1 changed files
.travis.yml
History View file @ 2bce9f3
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@@ -1,12 +1,7 @@
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-language: r
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-r:
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-  - devel
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+language: R
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+r: bioc-devel
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 sudo: false
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 cache: packages
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-bioc_required: true
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 warnings_are_errors: false
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-# Used for code coverage testing with covr and codecov
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-r_github_packages:
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-  - jimhester/covr
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 after_success:
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   - Rscript -e 'covr::codecov()'
Browse code

updates from master

From: Kasper Daniel Hansen <khansen@Tanngrisnir.local>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/bsseq@116910 bc3139a8-67e5-0310-9ffc-ced21a209358

khansen authored on 29/04/2016 04:18:31
Showing 1 changed files
.travis.yml
History View file @ 70daf60
... ... 
@@ -1,33 +1,12 @@
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 language: r
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-sudo: required
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-
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-# Choose your operating system(s) (default: linux)
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-os:
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-  - linux
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-  - osx
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-
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-# Bioconductor-specific stuff. If targetting bioc-devel then need to use
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-# "bioc_use_devel: true", otherwise remove or comment-out this line.
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-# TODO: Should --timings be added to r_check_args to mimic BioC build machines?
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+r:
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+  - devel
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+sudo: false
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+cache: packages
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 bioc_required: true
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-bioc_use_devel: true
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-# On CRAN all warnings are treated as errors; this is not true on Bioconductor.
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 warnings_are_errors: false
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-
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-# Need this if also using covr to get code coverage
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+# Used for code coverage testing with covr and codecov
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 r_github_packages:
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   - jimhester/covr
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 after_success:
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   - Rscript -e 'covr::codecov()'
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-
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-# bsseq-specific stuff
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-r_build_args: "--no-build-vignettes --no-manual"
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-# TODO: Travis is reporting an error when checking the vignette, hence the
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-# inclusion of --no-vignettes in r_check_args
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-r_check_args: "--no-vignettes"
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-# Must 'manually' install packages in SUGGESTS in order to run full tests
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-r_binary_packages:
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-  - RUnit
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-bioc_packages:
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-  - bsseqData
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-  - BiocStyle
Browse code

fixed conflict

From: Kasper Daniel Hansen <kasperdanielhansen@gmail.com>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/bsseq@110074 bc3139a8-67e5-0310-9ffc-ced21a209358

khansen authored on 29/10/2015 19:12:43
Showing 1 changed files
.travis.yml
History View file @ 65141d1
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,33 @@
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+language: r
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+sudo: required
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+
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+# Choose your operating system(s) (default: linux)
5 
+os:
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+  - linux
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+  - osx
8 
+
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+# Bioconductor-specific stuff. If targetting bioc-devel then need to use
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+# "bioc_use_devel: true", otherwise remove or comment-out this line.
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+# TODO: Should --timings be added to r_check_args to mimic BioC build machines?
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+bioc_required: true
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+bioc_use_devel: true
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+# On CRAN all warnings are treated as errors; this is not true on Bioconductor.
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+warnings_are_errors: false
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+
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+# Need this if also using covr to get code coverage
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+r_github_packages:
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+  - jimhester/covr
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+after_success:
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+  - Rscript -e 'covr::codecov()'
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+
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+# bsseq-specific stuff
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+r_build_args: "--no-build-vignettes --no-manual"
25 
+# TODO: Travis is reporting an error when checking the vignette, hence the
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+# inclusion of --no-vignettes in r_check_args
27 
+r_check_args: "--no-vignettes"
28 
+# Must 'manually' install packages in SUGGESTS in order to run full tests
29 
+r_binary_packages:
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+  - RUnit
31 
+bioc_packages:
32 
+  - bsseqData
33 
+  - BiocStyle