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Viewfc4e9f8
Repair subsetByOverlaps() on hasGRanges derivativesHervé Pagès authored on 20/05/2020 22:23:58 |
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View94da5a9
resolving conflicts:Kasper Daniel Hansen authored on 16/10/2017 18:53:15 |
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View8f4b326
- Use new 'maxgap' and 'minoverlap' defaults in "findOverlaps" method for hasGRanges objects. - Remove "subsetByOverlaps" methods for hasGRanges objects. They are redundant with the default "subsetByOverlaps" method defined in the IRanges package. The default method works out-of-the-box on any object that supports findOverlaps() and linear subsetting ([), which is the case for hasGRanges objects.Hervé Pagès authored on 18/09/2017 15:02:27 |
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View5e9d3da
merge conflictsKasper D. Hansen authored on 10/03/2016 02:44:17 |
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View8657761
merge conflictskhansen authored on 10/03/2016 02:44:17 |
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Viewa4efefe
findOverlaps() and subsetByOverlaps() have no 'algorithm' argument anymoreHerve Pages authored on 16/12/2015 21:21:51 |
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Viewcc7c8a0
findOverlaps() and subsetByOverlaps() have no 'algorithm' argument anymorehpages@fhcrc.org authored on 16/12/2015 21:21:51 |
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Viewc651329
add 'algorithm' arg to "subsetByOverlaps" methodsHerve Pages authored on 05/12/2014 06:42:18 |
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View0a6cbe0
add 'algorithm' arg to "subsetByOverlaps" methodshpages@fhcrc.org authored on 05/12/2014 06:42:18 |
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View8f99870
change 'algorithm' default from "intervaltree" to "nclist"Herve Pages authored on 05/12/2014 06:14:38 |
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View3fedb39
change 'algorithm' default from "intervaltree" to "nclist"hpages@fhcrc.org authored on 05/12/2014 06:14:38 |
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View40dc11d
The findOverlaps() generic got a new 'algorithm' argument in IRanges 2.1.10 (commit 96627). So add it to all "findOverlaps" methods defined in bsseq.Herve Pages authored on 08/11/2014 02:53:46 |
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View1d865e3
The findOverlaps() generic got a new 'algorithm' argument in IRanges 2.1.10 (commit 96627). So add it to all "findOverlaps" methods defined in bsseq.hpages@fhcrc.org authored on 08/11/2014 02:53:46 |
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View8e5853a
Version bump; various fixes to address issues reported by R CMD check, including documentation, use of :::, and deprecation of seqselectKasper D. Hansen authored on 04/10/2013 15:23:24 |
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View1824727
Version bump; various fixes to address issues reported by R CMD check, including documentation, use of :::, and deprecation of seqselectkhansen authored on 04/10/2013 15:23:24 |