July 20, 2018
View65e163c

Updates for recent changes

Peter Hickey authored on 20/07/2018 04:31:21
May 28, 2018
View866ab76

Work in progress: refactoring bsseq

Peter Hickey authored on 28/05/2018 23:42:18
April 24, 2018
View0275274

Replace base/matrixStats/DelayedArray by DelayedMatrixStats

Peter Hickey authored on 24/04/2018 17:53:48
July 3, 2017
View82aeb89

Fix same performance regression in getCoverage() as in getMeth()

Peter Hickey authored on 03/07/2017 02:26:39
View731e634

Fix performance regression in getMeth() [https://support.bioconductor.org/p/97611/]

Peter Hickey authored on 03/07/2017 02:19:32
View68622d3

Re-sync with SVN

Peter Hickey authored on 03/07/2017 02:12:56
April 7, 2017
View95e9059

bsseq now uses DelayedMatrix objects from the DelayedArray package for all matrix-like data

Peter Hickey authored on 07/04/2017 17:42:29
February 19, 2014
Viewe4a0313

fixed a (serious) bug in collapseBSseq: the return object would get a methylation of 100% everywhere.

khansen authored on 19/02/2014 16:00:38
October 4, 2013
View1824727

Version bump; various fixes to address issues reported by R CMD check, including documentation, use of :::, and deprecation of seqselect

khansen authored on 04/10/2013 15:23:24
July 12, 2013
View1e3d27d

various bugfixes

khansen authored on 12/07/2013 20:53:31
July 9, 2013
View18c4632

fixing problem in orderBSseq related to seqOrder and seqnames(BSseq)

khansen authored on 09/07/2013 01:30:03
July 6, 2013
View8e0ebd6

moved to a SummarizedExperiment backend for class 'BSseq'

khansen authored on 06/07/2013 21:26:40
May 23, 2013
Viewb3d6a1e

fixes to plotRegions/plotManyRegions and plot.BSseqTstat

khansen authored on 23/05/2013 01:08:15
October 13, 2012
Viewc5f9931

fixed two bugs reported by Andreas Schoenegger, updated citation information

khansen authored on 13/10/2012 16:48:16
July 20, 2012
View9f690ac

Adds bsseq and DBCiP to the repos.

m.carlson authored on 20/07/2012 17:45:09