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The rowsum() and colsum() generics are now defined in DelayedArray

Hervé Pagès authored on 31/01/2019 22:38:18
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@@ -1,5 +1,5 @@
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 Package: bsseq
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-Version: 1.19.2
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+Version: 1.19.3
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 Encoding: UTF-8
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 Title: Analyze, manage and store bisulfite sequencing data
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 Description: A collection of tools for analyzing and visualizing bisulfite
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@@ -25,10 +25,10 @@ Imports:
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     data.table (>= 1.11.8),
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     S4Vectors,
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     R.utils (>= 2.0.0),
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-    DelayedMatrixStats (>= 1.3.6),
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+    DelayedMatrixStats (>= 1.5.2),
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     permute,
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     limma,
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-    DelayedArray (>= 0.7.15),
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+    DelayedArray (>= 0.9.8),
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     Rcpp,
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     BiocParallel,
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     BSgenome,
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@@ -25,7 +25,7 @@ importFrom(graphics, "abline", "axis", "layout", "legend", "lines",
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 import(parallel)
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 importFrom(locfit, "locfit", "lp")
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 importFrom(DelayedMatrixStats, "rowSds", "rowVars", "colMeans2", "colSums2",
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-           "rowSums2", "rowMeans2", "rowAlls", "rowsum", "colsum")
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+           "rowSums2", "rowMeans2", "rowAlls")
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 importFrom(scales, "alpha")
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 importClassesFrom(Biobase, "AnnotatedDataFrame")