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@@ -338,6 +338,8 @@ BSmooth <- function(BSseq,
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# TODOs ------------------------------------------------------------------------
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+# TODO: The @trans slot isn't getting correctly set (it's using stats::plogis
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+# instead of DelayedArray::plogis).
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# TODO: Use the logging facilities of BiocParallel. This is a longterm goal.
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# For example, we could set custom messages within .BSmooth() using the
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# futile.logger syntax; see the BiocParalell vignette 'Errors, Logs and
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