@@ -1,5 +1,5 @@

 Package: bsseq

-Version: 0.7.1

+Version: 0.7.2

 Title: Analyze, manage and store bisulfite sequencing data

 Description: Tools for analyzing and visualizing bisulfite sequencing data

 Author: Kasper Daniel Hansen

@@ -58,6 +58,7 @@ exportMethods("[", "show",

 export("BSseq", "getMeth", "getCoverage", "getBSseq", "getStats",

        "collapseBSseq", "orderBSseq", "hasBeenSmoothed", "chrSelectBSseq",

        "BSmooth", "BSmooth.tstat", "dmrFinder", "fisherTests",

+       "combineList",

        "plotRegion", "plotManyRegions", 

        "read.umtab", "read.umtab2", "read.bsmooth",

        "poissonGoodnessOfFit", "binomialGoodnessOfFit",

@@ -2,7 +2,14 @@

 \title{bsseq news}

 \encoding{UTF-8}

-\section{Version 0.7}{

+\section{Version 0.7.x}{

+  \itemize{

+    \item Exposed combineList as a faster alternative to Reduce(combine,

+    list). 

+  }

+}

+

+\section{Version 0.6.x}{

   \itemize{

     \item Fixed a bug in getMeth, where type="raw" resulted in an error

     for non-smoothed data objects.

@@ -19,7 +19,7 @@ options(width=70)

 \newcommand{\Rpackage}[1]{{\texttt{#1}}}

 \newcommand{\software}[1]{\textsf{#1}}

 \newcommand{\R}{\software{R}}

-\newcommand{\bold}[1]{\textbf{#1}}

+\newcommand{\bold}[1]{\textbf{#1}} % Fix for R bibentry

 \title{The bsseq user's guide}

 \author{Kasper Daniel Hansen \\ \texttt{khansen@jhsph.edu}}

@@ -22,6 +22,7 @@ options(width=70)

 \newcommand{\Rpackage}[1]{{\texttt{#1}}}

 \newcommand{\software}[1]{\textsf{#1}}

 \newcommand{\R}{\software{R}}

+\newcommand{\bold}[1]{\textbf{#1}} % Fix for R bibentry

 \title{Analyzing WGBS with the bsseq package}

 \author{Kasper Daniel Hansen\\ \texttt{khansen@jhsph.edu}}