Browse code

fix a latex error; bumping version

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/bsseq@70595 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 16/10/2012 19:35:29
Showing5 changed files

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@@ -1,5 +1,5 @@
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 Package: bsseq
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-Version: 0.7.1
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+Version: 0.7.2
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 Title: Analyze, manage and store bisulfite sequencing data
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 Description: Tools for analyzing and visualizing bisulfite sequencing data
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 Author: Kasper Daniel Hansen
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@@ -58,6 +58,7 @@ exportMethods("[", "show",
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 export("BSseq", "getMeth", "getCoverage", "getBSseq", "getStats",
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        "collapseBSseq", "orderBSseq", "hasBeenSmoothed", "chrSelectBSseq",
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        "BSmooth", "BSmooth.tstat", "dmrFinder", "fisherTests",
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+       "combineList",
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        "plotRegion", "plotManyRegions", 
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        "read.umtab", "read.umtab2", "read.bsmooth",
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        "poissonGoodnessOfFit", "binomialGoodnessOfFit",
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@@ -2,7 +2,14 @@
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 \title{bsseq news}
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 \encoding{UTF-8}
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-\section{Version 0.7}{
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+\section{Version 0.7.x}{
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+  \itemize{
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+    \item Exposed combineList as a faster alternative to Reduce(combine,
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+    list). 
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+  }
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+}
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+
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+\section{Version 0.6.x}{
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   \itemize{
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     \item Fixed a bug in getMeth, where type="raw" resulted in an error
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     for non-smoothed data objects.
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@@ -19,7 +19,7 @@ options(width=70)
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 \newcommand{\Rpackage}[1]{{\texttt{#1}}}
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 \newcommand{\software}[1]{\textsf{#1}}
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 \newcommand{\R}{\software{R}}
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-\newcommand{\bold}[1]{\textbf{#1}}
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+\newcommand{\bold}[1]{\textbf{#1}} % Fix for R bibentry
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 \title{The bsseq user's guide}
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 \author{Kasper Daniel Hansen \\ \texttt{khansen@jhsph.edu}}
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@@ -22,6 +22,7 @@ options(width=70)
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 \newcommand{\Rpackage}[1]{{\texttt{#1}}}
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 \newcommand{\software}[1]{\textsf{#1}}
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 \newcommand{\R}{\software{R}}
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+\newcommand{\bold}[1]{\textbf{#1}} % Fix for R bibentry
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 \title{Analyzing WGBS with the bsseq package}
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 \author{Kasper Daniel Hansen\\ \texttt{khansen@jhsph.edu}}