Package: bsseq
Version: 1.14.0
Encoding: UTF-8
Title: Analyze, manage and store bisulfite sequencing data
Description: A collection of tools for analyzing and visualizing bisulfite
    sequencing data.
Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("aut", "cre"),
    email = "kasperdanielhansen@gmail.com"),
    person("Peter", "Hickey", role = "aut", email = "peter.hickey@gmail.com"))
Depends:
    R (>= 3.3),
    methods,
    BiocGenerics,
    GenomicRanges (>= 1.29.14),
    SummarizedExperiment (>= 1.7.8),
    parallel
Imports:
    IRanges (>= 2.11.16),
    GenomeInfoDb,
    scales,
    stats,
    graphics,
    Biobase,
    locfit,
    gtools,
    data.table,
    S4Vectors,
    R.utils (>= 2.0.0),
    matrixStats (>= 0.50.0),
    permute,
    limma,
    DelayedArray,
    HDF5Array
Suggests:
    RUnit,
    bsseqData,
    BiocStyle,
    rmarkdown,
    knitr,
Collate:
    utils.R
    hasGRanges.R
    BSseq_class.R
    BSseqTstat_class.R
    BSseq_utils.R
    combine.R
    read.bsmooth.R
    read.bismark.R
    BSmooth.R
    BSmooth.tstat.R
    dmrFinder.R
    gof_stats.R
    plotting.R
    fisher.R
    permutations.R
    BSmooth.fstat.R
    BSseqStat_class.R
    getStats.R
    hdf5_utils.R
    combine_utils.R
    DelayedArray_utils.R
License: Artistic-2.0
VignetteBuilder: knitr
URL: https://github.com/kasperdanielhansen/bsseq
LazyData: yes
LazyDataCompression: xz
BugReports: https://github.com/kasperdanielhansen/bsseq/issues
biocViews: DNAMethylation