Package: bsseq
Version: 1.4.0
Title: Analyze, manage and store bisulfite sequencing data.
Description: Tools for analyzing and visualizing bisulfite sequencing data
Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("aut", "cre"),
                    email = "kasperdanielhansen@gmail.com"))
Depends: R (>= 2.15), methods, BiocGenerics, S4Vectors, IRanges (>= 2.1.10),
        GenomicRanges (>= 1.19.6), parallel, matrixStats, GenomeInfoDb
Imports: scales, stats, graphics, Biobase, locfit, gtools
Suggests: RUnit, bsseqData
Collate: hasGRanges.R BSseq_class.R BSseqTstat_class.R BSseq_utils.R combine.R 
        utils.R read.bsmooth.R read.bismark.R BSmooth.R BSmooth.tstat.R dmrFinder.R
        gof_stats.R plotting.R fisher.R permutations.R
License: Artistic-2.0
URL: https://github.com/kasperdanielhansen/bsseq
LazyData: yes
biocViews: DNAMethylation