DESCRIPTION
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 Package: bsseq
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 Version: 1.16.1
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 Encoding: UTF-8
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 Title: Analyze, manage and store bisulfite sequencing data
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 Description: A collection of tools for analyzing and visualizing bisulfite
     sequencing data.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("aut", "cre"),
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     email = "kasperdanielhansen@gmail.com"),
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     person("Peter", "Hickey", role = "aut", email = "peter.hickey@gmail.com"))
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 Depends:
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     R (>= 3.3),
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     methods,
     BiocGenerics,
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     GenomicRanges (>= 1.29.14),
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     SummarizedExperiment (>= 1.9.18),
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     parallel
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 Imports:
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     IRanges (>= 2.11.16),
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     GenomeInfoDb,
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     scales,
     stats,
     graphics,
     Biobase,
     locfit,
     gtools,
     data.table,
     S4Vectors,
     R.utils (>= 2.0.0),
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     DelayedMatrixStats (>= 1.1.12),
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     permute,
     limma,
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     DelayedArray (>= 0.5.34),
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     HDF5Array
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 Suggests:
     RUnit,
     bsseqData,
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     BiocStyle,
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     rmarkdown,
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     knitr,
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 Collate:
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     utils.R
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     hasGRanges.R
     BSseq_class.R
     BSseqTstat_class.R
     BSseq_utils.R
     combine.R
     read.bsmooth.R
     read.bismark.R
     BSmooth.R
     BSmooth.tstat.R
     dmrFinder.R
     gof_stats.R
     plotting.R
     fisher.R
     permutations.R
     BSmooth.fstat.R
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     BSseqStat_class.R
     getStats.R
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     hdf5_utils.R
     DelayedArray_utils.R
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 License: Artistic-2.0
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 VignetteBuilder: knitr
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 URL: https://github.com/kasperdanielhansen/bsseq
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 LazyData: yes
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 LazyDataCompression: xz
 BugReports: https://github.com/kasperdanielhansen/bsseq/issues
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 biocViews: DNAMethylation