DESCRIPTION
9804152f
 Package: bsseq
b69dd60f
 Version: 1.10.0
81449250
 Title: Analyze, manage and store bisulfite sequencing data
a40a448d
 Description: A collection of tools for analyzing and visualizing bisulfite
     sequencing data.
3f81ef3e
 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("aut", "cre"),
a40a448d
     email = "kasperdanielhansen@gmail.com"),
     person("Peter", "Hickey", role = "ctb", email = "peter.hickey@gmail.com"))
 Depends:
ed78e79e
     R (>= 3.3),
a40a448d
     methods,
     BiocGenerics,
a4efefee
     GenomicRanges (>= 1.23.7),
a40a448d
     SummarizedExperiment (>= 0.1.1),
     parallel,
c5d31d05
     limma
a40a448d
 Imports:
a4efefee
     IRanges (>= 2.5.17),
c5d31d05
     GenomeInfoDb,
a40a448d
     scales,
     stats,
     graphics,
     Biobase,
     locfit,
     gtools,
     data.table,
     S4Vectors,
     R.utils (>= 2.0.0),
ed78e79e
     matrixStats (>= 0.50.0),
5e9d3dac
     permute
a40a448d
 Suggests:
     RUnit,
     bsseqData,
c5d31d05
     BiocStyle,
     knitr
a40a448d
 Collate:
     hasGRanges.R
     BSseq_class.R
     BSseqTstat_class.R
     BSseq_utils.R
     combine.R
     utils.R
     read.bsmooth.R
     read.bismark.R
     BSmooth.R
     BSmooth.tstat.R
     dmrFinder.R
     gof_stats.R
     plotting.R
     fisher.R
     permutations.R
     BSmooth.fstat.R
c5d31d05
     BSseqStat_class.R
     getStats.R
9804152f
 License: Artistic-2.0
c5d31d05
 VignetteBuilder: knitr
9f5a80d7
 URL: https://github.com/kasperdanielhansen/bsseq
9804152f
 LazyData: yes
c5d31d05
 LazyDataCompression: xz
 BugReports: https://github.com/kasperdanielhansen/bsseq/issues
9804152f
 biocViews: DNAMethylation