Name Mode Size
..
BioAssayDB-class.Rd 100644 1 kb
activeAgainst.Rd 100644 1 kb
activeTargets.Rd 100644 1 kb
addBioassayIndex.Rd 100644 1 kb
addDataSource.Rd 100644 1 kb
allCids.Rd 100644 1 kb
allTargets.Rd 100644 1 kb
assaySetTargets.Rd 100644 1 kb
bioactivityFingerprint.Rd 100644 3 kb
bioassay-class.Rd 100644 5 kb
bioassaySet-class.Rd 100644 5 kb
connectBioassayDB.Rd 100644 1 kb
crossReactivityProbability.Rd 100644 6 kb
disconnectBioassayDB.Rd 100644 1 kb
dropBioassay.Rd 100644 1 kb
dropBioassayIndex.Rd 100644 1 kb
getAssay.Rd 100644 1 kb
getAssays.Rd 100644 1 kb
getBioassaySetByCids.Rd 100644 1 kb
inactiveTargets.Rd 100644 1 kb
loadBioassay.Rd 100644 1 kb
loadIdMapping.Rd 100644 1 kb
newBioassayDB.Rd 100644 1 kb
parsePubChemBioassay.Rd 100644 2 kb
perTargetMatrix.Rd 100644 6 kb
queryBioassayDB.Rd 100644 1 kb
samplebioassay.Rd 100644 1 kb
scaleBioassaySet.Rd 100644 2 kb
screenedAtLeast.Rd 100644 1 kb
selectiveAgainst.Rd 100644 2 kb
targetSelectivity.Rd 100644 3 kb
translateTargetId.Rd 100644 2 kb
trinarySimilarity.Rd 100644 5 kb
README.md
# bioassayR [![platforms](http://bioconductor.org/shields/availability/release/bioassayR.svg)](http://www.bioconductor.org/packages/devel/bioc/html/bioassayR.html#archives) [![rank](http://www.bioconductor.org/shields/downloads/devel/bioassayR.svg)](http://bioconductor.org/packages/stats/bioc/bioassayR/) [![posts](http://www.bioconductor.org/shields/posts/bioassayR.svg)](https://support.bioconductor.org/t/bioassayr/) [![Bioc](http://www.bioconductor.org/shields/years-in-bioc/bioassayR.svg)](http://www.bioconductor.org/packages/devel/bioc/html/bioassayR.html#since) [![build-release](http://www.bioconductor.org/shields/build/release/bioc/bioassayR.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/bioassayR/) [![build-devel](http://www.bioconductor.org/shields/build/devel/bioc/bioassayR.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/bioassayR/) [![updated](http://www.bioconductor.org/shields/lastcommit/devel/bioc/bioassayR.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/bioassayR/) [![dependencies](http://www.bioconductor.org/shields/dependencies/devel/bioassayR.svg)](http://www.bioconductor.org/packages/devel/bioc/html/bioassayR.html#since) ### Installation To install the package, please use the _`BiocManager::install`_ command: ``` if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("bioassayR") ``` To obtain the most recent updates immediately, one can install it directly from github as follow: ``` if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("girke-lab/bioassayR", build_vignettes=TRUE, dependencies=TRUE) ``` ### Pre-built Database A pre-built database of public bioactivity data is available here: http://chemmine.ucr.edu/bioassayr/ And the source code to build the above database with bioassayR is here: https://github.com/TylerBackman/pubchem-bioassay-database