Package: beadarray
Title: Quality assessment and low-level analysis for Illumina BeadArray data
Version: 2.48.0
Date: 2020-04-07
Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie
Maintainer: Mark Dunning <>
Description: The package is able to read bead-level data (raw TIFFs and text 
    files) output by BeadScan as well as bead-summary data from BeadStudio.  
    Methods for quality assessment and low-level analysis are provided.
Depends: R (>= 2.13.0), BiocGenerics (>= 0.3.2), Biobase (>= 2.17.8), hexbin
Imports: BeadDataPackR, limma, AnnotationDbi, 
    stats4, reshape2, GenomicRanges, IRanges, 
    illuminaio, methods, ggplot2
Suggests: lumi, vsn, affy, hwriter, beadarrayExampleData,
    illuminaHumanv3.db, gridExtra, BiocStyle, 
    TxDb.Hsapiens.UCSC.hg19.knownGene, ggbio, Nozzle.R1, knitr
License: MIT + file LICENSE
biocViews: Microarray, OneChannel, QualityControl, Preprocessing
LazyData: yes 
VignetteBuilder: knitr