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  • 244deab (HEAD -> master, origin/master, origin/HEAD) Another update to raticate. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2022-06-12 03:20:47 -0700;
  • 9cafdc2 Updated the vendored raticate version. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2022-06-11 01:39:14 -0700;
  • bc9e7b9 Vendored the raticate bindings for tatami. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2022-05-30 18:20:25 -0700;
  • 054877a Explicitly pinned the versions of vendored libraries. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2022-05-26 15:24:18 -0700;
  • aea84b4 Added tatami and byteme for other packages. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2022-05-26 15:17:09 -0700;
  • 4df4026 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:41:54 +0000;
  • 3e6af14 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:41:54 +0000;
  • dd97920 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:36:32 +0000;
  • b7cc532 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:36:32 +0000;
  • 5c9ef4d (origin/RELEASE_3_13, RELEASE_3_13) More careful handling of natively supported Matrix subclasses. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-08-10 12:55:08 -0700;
  • 61788b0 More careful handling of natively supported Matrix subclasses. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-08-10 12:55:08 -0700;
  • 4993ed6 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:28:53 +0000;
  • 0c77f77 bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:28:53 +0000;
  • e693476 Actually try running the path method, to ensure it actually returns. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-05-11 21:55:10 -0700;
  • 99d9700 Testfix, added missing import. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-05-10 23:51:37 -0700;
  • 16b4ca9 Coerce SparseArraySeeds to dgCMatrices by default. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-05-10 23:41:03 -0700;
  • a8e0774 Added a realizeFileBackedMatrix utility for downstream use. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-05-10 22:30:18 -0700;
  • d3e4baf Backfilled the NEWS file. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-02-21 12:16:38 -0800;
  • 3a5c381 Added the toCsparse function for a one-line coercion. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-02-21 12:03:43 -0800;
  • cd533cf Migrated non-zero getter from scuttle. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-01-14 21:06:50 -0800;
  • 3d8e811 Bugfix for rownames passing with fast sparse row subset. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2021-01-01 22:37:09 -0800;
  • 7d9dc63 (origin/RELEASE_3_12, RELEASE_3_12) Hotpatch to avoid excessively fine chunks. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-19 15:15:07 -0800;
  • 2ce939d Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-15 23:13:52 -0800;
  • e9c53d3 Added more parallelization-related tests. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-10 22:01:06 -0800;
  • 73b0378 Bugfix for correct grid setting during sparse row subsetting. Rearranged the grid choice for easier comprehension. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-10 21:30:30 -0800;
  • 4229cac Added explicit tests for sparse row subsetting. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-10 20:59:29 -0800;
  • 5a2e32f Special-cased row chunking for sparse matrices. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-10 11:12:27 -0800;
  • 0ceff4b Avoid persistent intermediate chunks in shared-memory contexts. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-10 09:29:00 -0800;
  • f39b352 Centralized choice of grid. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-10 09:07:57 -0800;
  • 1e31679 Don't constrain the chunk sizes when parallelizing native matrices. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-10 08:44:27 -0800;
  • 23e6401 Switch to rcmdcheck, avoid dependency problems with devtools. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-11 23:49:03 -0800;
  • a5895ab Switch to rcmdcheck, avoid dependency problems with devtools. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-12-11 23:49:03 -0800;
  • 4954f9e Only fall back to block processing when we really have no choice. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-23 22:54:55 -0800;
  • 67dc7df More efficient fallback for blockApply when DA is pristine. Updated tests for more thorough checks. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-23 21:49:03 -0800;
  • 2c37aeb Use DummyArrayGrid to avoid limits on viewport size. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-15 22:58:56 -0800;
  • 7670c95 Skip the broken tests for the time being. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-06 08:58:07 -0800;
  • 1e573d5 Hotpatch for DA constraints on the grid size. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-11-06 08:20:35 -0800;
  • 79115b0 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:25:39 -0400;
  • 41c4060 bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:25:39 -0400;
  • e3a9842 Don't check multiple architectures for the test package. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-10-22 00:51:22 -0700;
  • 127adf9 Set grid=TRUE to enforce memory constraints in inputs to FUN. Avoid unnecessary copy with grid but without parallelization. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-10-02 01:00:58 -0700;
  • dd63321 Use set_grid_context to specify viewport information. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-10-01 20:27:49 -0700;
  • 8bf226f Add safety checks for sorted input to as_gCMatrix. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-28 20:19:01 -0700;
  • ae60e4d More flexible construction of a *gCMatrix object. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-27 22:31:27 -0700;
  • aaaa782 Improved setting of the expected block length. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-23 22:27:58 -0700;
  • 8fa01d0 Forgot to add a missing import. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-21 22:29:01 -0700;
  • e7f28ff Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-21 22:14:22 -0700;
  • 0a49157 Link to the doxygen GitHub page. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-21 22:14:09 -0700;
  • 6a6438e Ensure that the native apply reports grid parameters. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-21 22:13:24 -0700;
  • e808695 Cleaned up doxygen tags, documented leftover classes. Added mainpage with a link back to the BioC landing page. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-20 23:42:57 -0700;
  • f615bce Added manpage for blockapply wrappers. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-19 23:00:17 -0700;
  • a780f95 Added test script for morebeachtests CHECK. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-19 22:59:59 -0700;
  • e646dea Bumped version and date, reoxygenated. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-19 22:51:25 -0700;
  • df04bbe Modified linking vignette to describe v3 of the API. Add disclaimer to the top of all previous vignettes. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-19 22:13:03 -0700;
  • 881c9c9 Minor bugfix to dgCMatrix checker. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-19 19:09:56 -0700;
  • 66da1b0 Added tests for correct cloning, moved package loads to setup.R. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-19 17:47:52 -0700;
  • 6a27737 Added utility to easily promote dense to sparse blocks. Added accompanying tests. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-19 17:10:35 -0700;
  • 508fb98 Added col/rowBlockApply for fire-and-forget block looping. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-19 15:29:34 -0700;
  • d83b9a7 Added version 3 of the beachmat C++ API (with tests). by Aaron Lun <LTLA@users.noreply.github.com> 2020-09-19 00:44:10 -0700;
  • 19ec3bd Minor fiddling with longtests extension setup in an attempt to fix Windows failures. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-09-11 23:14:37 -0700;
  • 6ed4d18 Minor fix for renamed DelayedArray functions. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-07-26 21:17:02 -0700;
  • 2500a17 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:08:50 +0000;
  • f8ee009 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:08:50 +0000;
  • 8e57d4f Merge remote-tracking branch 'upstream/master' by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-02-06 00:27:15 -0800;
  • e45036f Fixes for new matrix inheritance. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2020-02-05 23:44:24 -0800;
  • b036445 (origin/RELEASE_3_10) Use RunLongTests instead of RunLongtests in .BBSoptions file by Hervé Pagès <hpages@fredhutch.org> 2019-11-26 23:01:01 -0800;
  • 0fa67d6 Use RunLongTests instead of RunLongtests in .BBSoptions file by Hervé Pagès <hpages@fredhutch.org> 2019-11-26 23:01:01 -0800;
  • 1e85e4d Merge branch 'postrelease' into RELEASE_3_10 by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-11-14 17:02:36 -0800;
  • bae95b3 Merge branch 'postrelease' by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-11-14 17:02:24 -0800;
  • 502bb41 Properly export as.matrix.AaronMatrix. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-11-14 17:02:19 -0800;
  • 8d092e6 Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-11-14 16:41:54 -0800;
  • 2a33533 Bumped version and date. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-11-14 16:29:24 -0800;
  • eb9f96f Merge branch 'postrelease' by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-11-14 16:28:42 -0800;
  • 96c1e9a Test improved error message. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-11-14 16:28:35 -0800;
  • e0cb8a3 Improve defences against accidental data.frame inputs. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-11-14 16:15:20 -0800;
  • 80319c2 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:21 -0400;
  • 11ca23b bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:33 -0400;
  • 40ce1f3 Update due to movement of 'type' generic. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-07-08 13:47:13 -0700;
  • 618ca8b Switched from BiocGenerics::t to Matrix::t. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-05-12 11:46:06 -0700;
  • 7fe38e7 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:14:57 -0400;
  • 2bdac6c (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:07 -0400;
  • 56cdc92 Removed unused variable. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-29 18:59:15 -0700;
  • 5b20757 Smoothened the unknown matrix bugfix for delayed_reader. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-27 19:41:04 -0700;
  • ab839ed Added tests for unknown matrix as DA seed. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-26 21:29:22 -0700;
  • cc8aeca Bugfix for delayed_reader with an unknown matrix. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-26 20:29:29 -0700;
  • c5b3828 Avoid class initialization order warning. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-26 19:17:46 -0700;
  • 11d4266 Merge pull request <a href="#16">#16</a> from LTLA/headeronly by Aaron Lun <LTLA@users.noreply.github.com> 2019-03-23 19:02:25 -0700;
  • 4a92a0b Bumped version number for major change. Updated description, date, NEWS. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-23 18:55:48 -0700;
  • a674305 Reverted back to storing *_matrix pointer in const_column. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-23 17:22:52 -0700;
  • 6ddad17 Removed unnecessary print statements. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-22 19:11:05 -0700;
  • 315f8a3 Hope that Rcpp handles move semantics by itself. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-22 09:52:10 -0700;
  • e4b677a Simplified raw_structure class to avoid preserving iterator validity. Made const_column responsible for returning valid iterators. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-22 09:49:22 -0700;
  • 7e90ed3 Improve rule of 5 handling for classes with Rcpp members. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-22 08:44:11 -0700;
  • 7494dfa Require matrix to be passed to fill, avoid storing pointers. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-21 22:22:12 -0700;
  • 30dc602 Simplified description of specialized access to use const_column. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-21 20:49:01 -0700;
  • 73609cf Minor bugfixes to const_column. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-21 20:48:32 -0700;
  • 9d4f085 Simplified beachtest C++ code for const access. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-21 20:13:46 -0700;
  • 7505f62 More explicit distinction between iterator usage in raw_structure. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-21 20:03:41 -0700;
  • facb3ef Added SEXP constructor for output_param. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-21 19:00:42 -0700;
  • 5a691d1 Reduce unnecessary use of stringstreams in error messages. by LTLA <infinite.monkeys.with.keyboards@gmail.com> 2019-03-21 18:59:54 -0700;