1. bamsignals
  2. Graph
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  • b1662da (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:42:09 -0400;
  • 58fa17f (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:42:09 -0400;
  • 70f94d4 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:38:18 -0400;
  • 34bfc4e (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:38:18 -0400;
  • 8f750f0 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:17 -0400;
  • aac37df (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:17 -0400;
  • 90f50dc bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:24:16 +0000;
  • 27b70be (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:24:16 +0000;
  • c40c4b0 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-16 21:32:19 -0800;
  • ac3dee6 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:19:18 +0000;
  • d576434 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:19:18 +0000;
  • 4c6bbe2 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:11:57 +0000;
  • 91d1e61 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:11:57 +0000;
  • 59d71d0 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:03:29 -0400;
  • 5f53396 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:03:28 -0400;
  • 026c62d Call Rscript instead of R in Makevars by Hervé Pagès <hpages@fredhutch.org> 2020-07-14 13:03:36 -0700;
  • 46d5ae9 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:47:28 +0000;
  • 246b07e (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:47:28 +0000;
  • ae7c669 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:39:08 -0400;
  • 4ed80c9 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:13 -0400;
  • 66986b7 Added BugReport URL; Version bump for rebuild by Johannes Helmuth <johannes.helmuth@laborberlin.com> 2019-10-24 10:04:56 +0200;
  • ace5f01 NEWS updated by Johannes Helmuth <johannes.helmuth@laborberlin.com> 2019-10-24 10:04:31 +0200;
  • 05061d3 Returnvalue for bam.h functions added by Johannes Helmuth <johannes.helmuth@laborberlin.com> 2019-10-24 10:04:22 +0200;
  • 885eb7b Version bump for rebuild by Johannes Helmuth <johannes.helmuth@laborberlin.com> 2019-10-22 15:31:47 +0200;
  • 6f18372 Resolved conflicts merge upstream/master by Johannes Helmuth <johannes.helmuth@laborberlin.com> 2019-10-22 15:08:02 +0200;
  • 7416dc7 Adjust Makevars to work with latest Rhtslib by Hervé Pagès <hpages@fredhutch.org> 2019-10-12 12:33:02 -0700;
  • 6401c81 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:12:27 -0400;
  • dba9a4a (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:53 -0400;
  • 5ad00fa bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:34 -0400;
  • 3107d3a (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:57 -0400;
  • ab95ede replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-28 18:51:26 -0400;
  • 06b6282 (origin/RELEASE_3_7, RELEASE_3_7) Bump version to trigger propagation of new Mac binary by Hervé Pagès <hpages@fredhutch.org> 2018-05-31 16:52:28 -0700;
  • 04f6474 Path to htslib header files has changed in Rhtslib 1.13.1 by Hervé Pagès <hpages@fredhutch.org> 2018-05-22 18:46:32 -0700;
  • 5a7597d bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:41 -0400;
  • 75cd1f5 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:36 -0400;
  • da46ca0 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:07 -0400;
  • 7499312 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:49 -0400;
  • e653e5e bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • b123b83 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 06b6724 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • db36f52 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 510d8e5 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 0327435 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 4d61c6a (origin/RELEASE_3_3, RELEASE_3_3) Bump versions of all packages that directly depend on Rhtslib now that the latter is linking statically against htslib on mac. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-25 18:12:49 +0000;
  • 12690b1 Bump version of packages that directly depend on Rhtslib, now that it is linking against htslib statically. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-25 18:10:26 +0000;
  • 0e72da4 Compatible version number with bioconductor versioning by your-highness <helmuth@molgen.mpg.de> 2016-05-17 15:11:46 +0200;
  • 4e03790 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • 5e3dd3e Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • a27a747 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 0545458 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • 76dffce bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • b65c0fc Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • d78e6d4 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 7213558 Updated testthat tests for new testthat version 1.0 by your-highness <helmuth@molgen.mpg.de> 2016-04-21 08:52:35 -0700;
  • d7821f3 version bump by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-04-20 20:13:50 +0000;
  • b600536 (origin/RELEASE_3_2, RELEASE_3_2) deal with testthat changes by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-04-20 20:13:26 +0000;
  • d04b7ef Fixing error arising from testthat update (v1.0) by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-04-20 07:31:13 +0000;
  • b220bed manually commit last few commits from github by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-04-13 22:40:26 +0000;
  • dfcdcd8 Integrated changes from Johannes with changes from SVN by Alessandro Mammana <mammana@geniux.molgen.mpg.de> 2016-04-11 09:41:32 +0200;
  • 096f50d Merge branch 'master' of https://github.com/lamortenera/bamsignals by Alessandro Mammana <mammana@geniux.molgen.mpg.de> 2016-04-11 09:30:46 +0200;
  • 953935b Merge branch 'devel' by Alessandro Mammana <mammana@geniux.molgen.mpg.de> 2016-04-11 09:30:25 +0200;
  • 12c0e1e Vignette improved for paired end, tlenfilter by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-04-08 16:15:40 +0200;
  • 73a61ec Testing now with persistent data, tlenFilter argument renamed by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-04-08 16:15:17 +0200;
  • db6f038 Version number corrected for Bioconductor Release and NEWS updated by Alessandro Mammana <mammana@molgen.mpg.de> 2016-04-06 22:00:29 +0000;
  • 0bd7bd9 Version number corrected for Bioconductor Release and NEWS updated by a.mammana <a.mammana@bc3139a8-67e5-0310-9ffc-ced21a209358> 2016-04-06 22:00:29 +0000;
  • 8cfece5 Documentation regenerated. by Alessandro Mammana <mammana@molgen.mpg.de> 2016-04-06 22:00:20 +0000;
  • 5770090 Documentation regenerated. by a.mammana <a.mammana@bc3139a8-67e5-0310-9ffc-ced21a209358> 2016-04-06 22:00:20 +0000;
  • 1675e8e Version updated by Alessandro Mammana <mammana@molgen.mpg.de> 2016-04-06 22:00:12 +0000;
  • 15ab4ba Version updated by a.mammana <a.mammana@bc3139a8-67e5-0310-9ffc-ced21a209358> 2016-04-06 22:00:12 +0000;
  • bb20898 Fixed compiler warning by Alessandro Mammana <mammana@molgen.mpg.de> 2016-04-06 22:00:04 +0000;
  • 216cf3b Fixed compiler warning by a.mammana <a.mammana@bc3139a8-67e5-0310-9ffc-ced21a209358> 2016-04-06 22:00:04 +0000;
  • 919f031 Filtering for SAMFLAGS introduced by Alessandro Mammana <mammana@molgen.mpg.de> 2016-04-06 21:59:54 +0000;
  • 252156d Filtering for SAMFLAGS introduced by a.mammana <a.mammana@bc3139a8-67e5-0310-9ffc-ced21a209358> 2016-04-06 21:59:54 +0000;
  • d3340ad put correct version number and fixed generator script by Alessandro Mammana <mammana@molgen.mpg.de> 2016-04-06 21:59:41 +0000;
  • 0de3e59 put correct version number and fixed generator script by a.mammana <a.mammana@bc3139a8-67e5-0310-9ffc-ced21a209358> 2016-04-06 21:59:41 +0000;
  • 561515a TLEN Filter introduced. Tests updated. Pull request is following by Alessandro Mammana <mammana@molgen.mpg.de> 2016-04-06 21:59:30 +0000;
  • 9ba4204 TLEN Filter introduced. Tests updated. Pull request is following by a.mammana <a.mammana@bc3139a8-67e5-0310-9ffc-ced21a209358> 2016-04-06 21:59:30 +0000;
  • 3f9d95d Merge branch 'master' of https://github.com/lamortenera/bamsignals by Alessandro Mammana <mammana@geniux.molgen.mpg.de> 2016-04-06 22:57:16 +0200;
  • f8769a1 Merge pull request <a href="#15">#15</a> from lamortenera/yourhighness by lamortenera <ale.fener@gmail.com> 2016-04-06 21:39:00 +0100;
  • 419a4cd Version number corrected for Bioconductor Release and NEWS updated by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-03-30 17:47:53 +0200;
  • 3d70ea9 Documentation regenerated. by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-03-15 11:02:24 +0100;
  • 50f22a6 Version updated by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-03-15 09:00:25 +0100;
  • bd05e93 Fixed compiler warning by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-03-14 18:13:15 +0100;
  • 69bdcc1 Filtering for SAMFLAGS introduced by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-03-14 18:08:02 +0100;
  • bf1e033 Merge branch 'master' of https://github.com/lamortenera/bamsignals by Alessandro Mammana <mammana@antipasti.molgen.mpg.de> 2016-02-23 15:18:54 +0100;
  • 79f5175 put correct version number and fixed generator script by Alessandro Mammana <mammana@antipasti.molgen.mpg.de> 2016-02-23 15:18:34 +0100;
  • b3acfd2 Merge pull request <a href="#12">#12</a> from lamortenera/yourhighness by lamortenera <ale.fener@gmail.com> 2016-02-23 15:15:05 +0100;
  • 5526f3e TLEN Filter introduced. Tests updated. Pull request is following by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-01-22 15:41:47 +0100;
  • 649706e Merge pull request <a href="#10">#10</a> from lamortenera/yourhighness by lamortenera <ale.fener@gmail.com> 2016-01-20 17:28:07 +0100;
  • b658538 Paired end counting now allows for filtering fragments for minimum and maximum fragment sizes. by Johannes Helmuth <helmuth@molgen.mpg.de> 2016-01-13 17:09:18 +0100;
  • 9534f51 Path expansion for bampath (e.g. '~' expands to /home/<user>). Version 1.3.1 by Johannes Helmuth <helmuth@molgen.mpg.de> 2015-10-22 15:07:32 +0200;
  • 6e8f519 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 028a97b Bumped version number of all packages after creation of 3.2 branch. by d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358> 2015-10-13 19:59:53 +0000;
  • 404b610 Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 520eb50 Bumped versions of all packages prior to creating 3.2 branch. by d.tenenbaum <d.tenenbaum@bc3139a8-67e5-0310-9ffc-ced21a209358> 2015-10-13 19:36:05 +0000;
  • f521d2d Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • b65dacc Commit made by the Bioconductor Git-SVN bridge. by a.mammana <a.mammana@bc3139a8-67e5-0310-9ffc-ced21a209358> 2015-06-15 13:52:32 +0000;
  • 96db2dc Commit made by the Bioconductor Git-SVN bridge. by Alessandro Mammana <mammana@molgen.mpg.de> 2015-06-15 13:52:32 +0000;
  • 5d69d4f Update README.md by lamortenera <ale.fener@gmail.com> 2015-06-15 15:52:27 +0200;
  • b589e80 Commit made by the Bioconductor Git-SVN bridge. by a.mammana <a.mammana@bc3139a8-67e5-0310-9ffc-ced21a209358> 2015-06-15 13:52:11 +0000;