Name Mode Size
..
backtransformAffine.matrix.R 100644 1 kb
backtransformPrincipalCurve.matrix.R 100644 3 kb
callNaiveGenotypes.R 100644 2 kb
distanceBetweenLines.R 100644 3 kb
findPeaksAndValleys.R 100644 1 kb
fitPrincipalCurve.matrix.R 100644 2 kb
fitXYCurve.matrix.R 100644 1 kb
iwpca.matrix.R 100644 2 kb
likelihood.smooth.spline.R 100644 1 kb
medianPolish.matrix.R 100644 1 kb
normalizeAffine.matrix.R 100644 3 kb
normalizeAverage.list.R 100644 1 kb
normalizeAverage.matrix.R 100644 1 kb
normalizeCurveFit.matrix.R 100644 4 kb
normalizeDifferencesToAverage.R 100644 1 kb
normalizeFragmentLength-ex1.R 100644 2 kb
normalizeFragmentLength-ex2.R 100644 5 kb
normalizeQuantileRank.list.R 100644 1 kb
normalizeQuantileRank.matrix.R 100644 1 kb
normalizeQuantileSpline.matrix.R 100644 1 kb
normalizeTumorBoost,flavors.R 100644 1 kb
normalizeTumorBoost.R 100644 1 kb
robustSmoothSpline.R 100644 1 kb
rowAverages.matrix.R 100644 0 kb
sampleCorrelations.matrix.R 100644 0 kb
sampleTuples.R 100644 0 kb
wpca.matrix.R 100644 2 kb
wpca2.matrix.R 100644 1 kb
README.md
<div id="badges"><!-- pkgdown markup --> <a href="https://bioconductor.org/packages/aroma.light/"><img border="0" src="https://bioconductor.org/shields/years-in-bioc/aroma.light.svg" alt="Bioconductor since badge"/></a> <a href="https://bioconductor.org/checkResults/release/bioc-LATEST/aroma.light/"><img border="0" src="https://bioconductor.org/shields/build/release/bioc/aroma.light.svg" alt="Bioconductor build status"/></a> <a href="https://bioconductor.org/checkResults/devel/bioc-LATEST/aroma.light/"><img border="0" src="https://bioconductor.org/shields/build/devel/bioc/aroma.light.svg" alt="Bioconductor build status"/></a> <a href="https://github.com/HenrikBengtsson/aroma.light/actions?query=workflow%3AR-CMD-check"><img border="0" src="https://github.com/HenrikBengtsson/aroma.light/actions/workflows/R-CMD-check.yaml/badge.svg?branch=develop" alt="R CMD check status"/></a> <a href="https://app.codecov.io/gh/HenrikBengtsson/aroma.light"><img border="0" src="https://codecov.io/gh/HenrikBengtsson/aroma.light/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> </div> # aroma.light: Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types ## Installation R package aroma.light is available on [Bioconductor](https://www.bioconductor.org/packages/devel/bioc/html/aroma.light.html) and can be installed in R as: ```r install.packages("BiocManager") BiocManager::install("aroma.light") ``` ### Pre-release version To install the pre-release version that is available in Git branch `develop` on GitHub, use: ```r remotes::install_github("HenrikBengtsson/aroma.light", ref="develop") ``` This will install the package from source. <!-- pkgdown-drop-below --> ## Contributing To contribute to this package, please see [CONTRIBUTING.md](CONTRIBUTING.md).