Name Mode Size
..
AffxArray.h 100644 10 kb
AffxBinaryFile.cpp 100644 2 kb
AffxBinaryFile.h 100644 15 kb
AffxByteArray.cpp 100644 31 kb
AffxByteArray.h 100644 6 kb
AffxConv.cpp 100644 11 kb
AffxConv.h 100644 2 kb
AffxMultiDimensionalArray.h 100644 36 kb
AffxSTL.h 100644 4 kb
AffxSplitArray.h 100644 4 kb
AffxStatistics.cpp 100644 7 kb
AffxStatistics.h 100644 1 kb
AffxString.cpp 100644 24 kb
AffxString.h 100644 10 kb
AffxTime.cpp 100644 16 kb
AffxTime.h 100644 8 kb
AptErrno.h 100644 1 kb
AptVersionInfo.h 100644 4 kb
BaseEngine.cpp 100644 17 kb
BaseEngine.h 100644 5 kb
CalvinChpCheck.h 100644 62 kb
CalvinToText.cpp 100644 15 kb
CalvinToText.h 100644 4 kb
CelCheck.h 100644 7 kb
ChpCheck.h 100644 17 kb
Convert.cpp 100644 13 kb
Convert.h 100644 8 kb
DotProgress.cpp 100644 1 kb
DotProgress.h 100644 2 kb
Engines.h 100644 2 kb
Err.cpp 100644 6 kb
Err.h 100644 7 kb
ErrHandler.h 100644 2 kb
Except.h 100644 2 kb
FrugalVector.h 100644 3 kb
Fs.cpp 100644 40 kb
Fs.h 100644 17 kb
FsPath.cpp 100644 17 kb
FsPath.h 100644 13 kb
Guid.cpp 100644 5 kb
Guid.h 100644 2 kb
LineFile.cpp 100644 3 kb
LineFile.h 100644 3 kb
LogStream.cpp 100644 10 kb
LogStream.h 100644 2 kb
MatrixCheck.h 100644 6 kb
MessageStream.h 100644 2 kb
MixedFileCheck.h 100644 10 kb
MsgHandler.h 100644 2 kb
MsgSocketHandler.cpp 100644 4 kb
MsgSocketHandler.h 100644 4 kb
MsgStream.cpp 100644 2 kb
MsgStream.h 100644 2 kb
Options.cpp 100644 8 kb
Options.h 100644 7 kb
OutputMessageStream.cpp 100644 1 kb
OutputMessageStream.h 100644 2 kb
PgOptions.cpp 100644 27 kb
PgOptions.h 100644 16 kb
Progress.h 100644 2 kb
ProgressDot.h 100644 4 kb
ProgressHandler.h 100644 3 kb
RowFile.cpp 100644 12 kb
RowFile.h 100644 7 kb
SQLite.cpp 100644 9 kb
SQLite.h 100644 3 kb
SocketBase.cpp 100644 6 kb
SocketBase.h 100644 5 kb
SocketClient.cpp 100644 3 kb
SocketClient.h 100644 2 kb
SocketEngine.cpp 100644 8 kb
SocketEngine.h 100644 5 kb
SocketHandler.cpp 100644 3 kb
SocketHandler.h 100644 4 kb
SocketServer.cpp 100644 5 kb
SocketServer.h 100644 4 kb
SocketTextHandler.cpp 100644 3 kb
SocketTextHandler.h 100644 2 kb
SocketUtil.cpp 100644 4 kb
SocketUtil.h 100644 3 kb
TableFile.cpp 100644 11 kb
TableFile.h 100644 9 kb
TextFileCheck.h 100644 5 kb
TmpFileFactory.cpp 100644 6 kb
TmpFileFactory.h 100644 6 kb
Util.cpp 100644 31 kb
Util.h 100644 17 kb
Verbose.cpp 100644 9 kb
Verbose.h 100644 5 kb
VerboseErrHandler.h 100644 3 kb
apt-check-calvinchp.cpp 100644 5 kb
apt-check-cel.cpp 100644 4 kb
apt-check-chp.cpp 100644 5 kb
apt-check-matrix.cpp 100644 5 kb
apt-check-mixedfile.cpp 100644 5 kb
apt-check-textfile.cpp 100644 4 kb
apt-engine-wrapper.cpp 100644 5 kb
apt-engine-wrapper.vcproj 100644 8 kb
chksum.cpp 100644 2 kb
chksum.h 100644 1 kb
dump-guid.cpp 100644 1 kb
md5.cpp 100644 9 kb
md5.h 100644 2 kb
md5sum.cpp 100644 6 kb
md5sum.h 100644 2 kb
test-md5sum.cpp 100644 3 kb
test-tmpfilefactory.cpp 100644 5 kb
util-meminfo.cpp 100644 3 kb
README.md
<div id="badges"><!-- pkgdown markup --> <a href="https://bioconductor.org/packages/affxparser/"><img border="0" src="https://bioconductor.org/shields/years-in-bioc/affxparser.svg" alt="Bioconductor since badge"/></a> <a href="https://bioconductor.org/checkResults/release/bioc-LATEST/affxparser/"><img border="0" src="https://bioconductor.org/shields/build/release/bioc/affxparser.svg" alt="Bioconductor release build status"/></a> <a href="https://bioconductor.org/checkResults/devel/bioc-LATEST/affxparser/"><img border="0" src="https://bioconductor.org/shields/build/devel/bioc/affxparser.svg" alt="Bioconductor devel build status"/></a> <a href="https://github.com/HenrikBengtsson/affxparser/actions?query=workflow%3AR-CMD-check"><img border="0" src="https://github.com/HenrikBengtsson/affxparser/workflows/R-CMD-check/badge.svg?branch=develop" alt="Build status"/></a> <a href="https://codecov.io/gh/HenrikBengtsson/affxparser"><img border="0" src="https://codecov.io/gh/HenrikBengtsson/affxparser/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> </div> # affxparser: Affymetrix File Parsing SDK ## Installation R package affxparser is available on [Bioconductor](https://www.bioconductor.org/packages/devel/bioc/html/affxparser.html) and can be installed in R as: ```r install.packages("BiocManager") BiocManager::install("affxparser") ``` ### Pre-release version To install the pre-release version that is available in Git branch `develop` on GitHub, use: ```r remotes::install_github("HenrikBengtsson/affxparser", ref="develop") ``` This will install the package from source. Because of this and because this package also compiles native code, Windows users need to have [Rtools](https://cran.r-project.org/bin/windows/Rtools/) installed and macOS users need to have [Xcode](https://developer.apple.com/xcode/) installed. <!-- pkgdown-drop-below --> ## Contributing To contribute to this package, please see [CONTRIBUTING.md](CONTRIBUTING.md).