Name Mode Size
..
AllelePeaks.h 100644 2 kb
CDFData.cpp 100644 13 kb
CDFData.h 100644 10 kb
CDFDataTypes.h 100644 2 kb
CDFProbeGroupInformation.cpp 100644 3 kb
CDFProbeGroupInformation.h 100644 3 kb
CDFProbeInformation.cpp 100644 2 kb
CDFProbeInformation.h 100644 3 kb
CDFProbeSetInformation.cpp 100644 3 kb
CDFProbeSetInformation.h 100644 3 kb
CDFQCProbeInformation.cpp 100644 1 kb
CDFQCProbeInformation.h 100644 2 kb
CDFQCProbeSetInformation.cpp 100644 2 kb
CDFQCProbeSetInformation.h 100644 2 kb
CELData.cpp 100644 23 kb
CELData.h 100644 14 kb
CHPBackgroundZone.cpp 100644 2 kb
CHPBackgroundZone.h 100644 2 kb
CHPData.cpp 100644 23 kb
CHPData.h 100644 11 kb
CHPExpressionEntry.cpp 100644 3 kb
CHPExpressionEntry.h 100644 7 kb
CHPGenotypeEntry.cpp 100644 3 kb
CHPGenotypeEntry.h 100644 3 kb
CHPMultiDataData.cpp 100644 46 kb
CHPMultiDataData.h 100644 20 kb
CHPQuantificationData.cpp 100644 8 kb
CHPQuantificationData.h 100644 5 kb
CHPQuantificationDetectionData.cpp 100644 9 kb
CHPQuantificationDetectionData.h 100644 6 kb
CHPReseqEntry.h 100644 3 kb
CHPTilingData.cpp 100644 8 kb
CHPTilingData.h 100644 6 kb
CHPTilingEntry.h 100644 1 kb
CHPUniversalEntry.cpp 100644 1 kb
CHPUniversalEntry.h 100644 2 kb
ChromosomeMultiDataSummaryData.h 100644 2 kb
ChromosomeSegmentMultiDataData.h 100644 3 kb
ColumnInfo.cpp 100644 2 kb
ColumnInfo.h 100644 5 kb
CytoGenotypeCallMultiDataData.h 100644 2 kb
DATData.cpp 100644 12 kb
DATData.h 100644 11 kb
DataException.cpp 100644 2 kb
DataException.h 100644 5 kb
DataGroup.cpp 100644 4 kb
DataGroup.h 100644 4 kb
DataGroupHeader.cpp 100644 3 kb
DataGroupHeader.h 100644 4 kb
DataSet.cpp 100644 20 kb
DataSet.h 100644 14 kb
DataSetHeader.cpp 100644 4 kb
DataSetHeader.h 100644 5 kb
FamilialMultiDataData.h 100644 3 kb
FileHeader.cpp 100644 3 kb
FileHeader.h 100644 3 kb
GenericData.cpp 100644 14 kb
GenericData.h 100644 10 kb
GenericDataHeader.cpp 100644 6 kb
GenericDataHeader.h 100644 5 kb
GenericDataTypes.h 100644 2 kb
MarkerABSignals.h 100644 1 kb
MemMapFile.cpp 100644 6 kb
MemMapFile.h 100644 5 kb
ProbeSetMultiDataData.cpp 100644 3 kb
ProbeSetMultiDataData.h 100644 8 kb
ProbeSetQuantificationData.h 100644 2 kb
ProbeSetQuantificationDetectionData.h 100644 2 kb
TilingResultData.h 100644 2 kb
README.md
<div id="badges"><!-- pkgdown markup --> <a href="https://bioconductor.org/packages/affxparser/"><img border="0" src="https://bioconductor.org/shields/years-in-bioc/affxparser.svg" alt="Bioconductor since badge"/></a> <a href="https://bioconductor.org/checkResults/release/bioc-LATEST/affxparser/"><img border="0" src="https://bioconductor.org/shields/build/release/bioc/affxparser.svg" alt="Bioconductor release build status"/></a> <a href="https://bioconductor.org/checkResults/devel/bioc-LATEST/affxparser/"><img border="0" src="https://bioconductor.org/shields/build/devel/bioc/affxparser.svg" alt="Bioconductor devel build status"/></a> <a href="https://github.com/HenrikBengtsson/affxparser/actions?query=workflow%3AR-CMD-check"><img border="0" src="https://github.com/HenrikBengtsson/affxparser/workflows/R-CMD-check/badge.svg?branch=develop" alt="Build status"/></a> <a href="https://codecov.io/gh/HenrikBengtsson/affxparser"><img border="0" src="https://codecov.io/gh/HenrikBengtsson/affxparser/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> </div> # affxparser: Affymetrix File Parsing SDK ## Installation R package affxparser is available on [Bioconductor](https://www.bioconductor.org/packages/devel/bioc/html/affxparser.html) and can be installed in R as: ```r install.packages("BiocManager") BiocManager::install("affxparser") ``` ### Pre-release version To install the pre-release version that is available in Git branch `develop` on GitHub, use: ```r remotes::install_github("HenrikBengtsson/affxparser", ref="develop") ``` This will install the package from source. Because of this and because this package also compiles native code, Windows users need to have [Rtools](https://cran.r-project.org/bin/windows/Rtools/) installed and macOS users need to have [Xcode](https://developer.apple.com/xcode/) installed. <!-- pkgdown-drop-below --> ## Contributing To contribute to this package, please see [CONTRIBUTING.md](CONTRIBUTING.md).