Name Mode Size
..
fusion 040000
000.init.c 100644 3 kb
Makevars 100644 6 kb
Makevars.win 100644 6 kb
RAffxErrHandler.h 100644 1 kb
R_affx_bpmap_parser.cpp 100644 24 kb
R_affx_cdf_extras.cpp 100644 17 kb
R_affx_cdf_extras.h 100644 0 kb
R_affx_cdf_parser.cpp 100644 62 kb
R_affx_cel_parser.cpp 100644 19 kb
R_affx_chp_parser.cpp 100644 28 kb
R_affx_clf_pgf_parser.cpp 100644 10 kb
R_affx_constants.h 100644 1 kb
R_affx_test_bpmap_cmdline.cpp 100644 3 kb
R_affx_test_cdfwriter_cmdline.cpp 100644 4 kb
R_affx_test_celwriter_cmdline.cpp 100644 4 kb
R_affx_test_cmd_line.cpp 100644 3 kb
_mingw.h 100644 17 kb
_mingw_gcc463.h 100644 18 kb
_mingw_gcc493.h 100644 17 kb
_mingw_preR42.h 100644 1 kb
README.md
<div id="badges"><!-- pkgdown markup --> <a href="https://bioconductor.org/packages/affxparser/"><img border="0" src="https://bioconductor.org/shields/years-in-bioc/affxparser.svg" alt="Bioconductor since badge"/></a> <a href="https://bioconductor.org/checkResults/release/bioc-LATEST/affxparser/"><img border="0" src="https://bioconductor.org/shields/build/release/bioc/affxparser.svg" alt="Bioconductor release build status"/></a> <a href="https://bioconductor.org/checkResults/devel/bioc-LATEST/affxparser/"><img border="0" src="https://bioconductor.org/shields/build/devel/bioc/affxparser.svg" alt="Bioconductor devel build status"/></a> <a href="https://github.com/HenrikBengtsson/affxparser/actions?query=workflow%3AR-CMD-check"><img border="0" src="https://github.com/HenrikBengtsson/affxparser/workflows/R-CMD-check/badge.svg?branch=develop" alt="Build status"/></a> <a href="https://codecov.io/gh/HenrikBengtsson/affxparser"><img border="0" src="https://codecov.io/gh/HenrikBengtsson/affxparser/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> </div> # affxparser: Affymetrix File Parsing SDK ## Installation R package affxparser is available on [Bioconductor](https://www.bioconductor.org/packages/devel/bioc/html/affxparser.html) and can be installed in R as: ```r install.packages("BiocManager") BiocManager::install("affxparser") ``` ### Pre-release version To install the pre-release version that is available in Git branch `develop` on GitHub, use: ```r remotes::install_github("HenrikBengtsson/affxparser", ref="develop") ``` This will install the package from source. Because of this and because this package also compiles native code, Windows users need to have [Rtools](https://cran.r-project.org/bin/windows/Rtools/) installed and macOS users need to have [Xcode](https://developer.apple.com/xcode/) installed. <!-- pkgdown-drop-below --> ## Contributing To contribute to this package, please see [CONTRIBUTING.md](CONTRIBUTING.md).