Name Mode Size
..
901.Dictionary.R 100644 2 kb
902.CellCoordinatesAndIndices.R 100644 4 kb
909.CellIndexMaps.R 100644 6 kb
applyCdfBlocks.R 100644 1 kb
applyCdfGroupFields.R 100644 1 kb
applyCdfGroups.R 100644 3 kb
arrangeCelFilesByChipType.R 100644 4 kb
cdfAddBaseMmCounts.R 100644 4 kb
cdfAddPlasqTypes.R 100644 4 kb
cdfAddProbeOffsets.R 100644 3 kb
cdfGetFields.R 100644 1 kb
cdfGetGroups.R 100644 1 kb
cdfGtypeCelToPQ.R 100644 2 kb
cdfHeaderToCelHeader.R 100644 2 kb
cdfMergeAlleles.R 100644 4 kb
cdfMergeStrands.R 100644 3 kb
cdfMergeToQuartets.R 100644 3 kb
cdfOrderBy.R 100644 1 kb
cdfOrderColumnsBy.R 100644 2 kb
cdfSetDimension.R 100644 2 kb
compareCdfs.R 100644 7 kb
compareCels.R 100644 4 kb
convertCdf.R 100644 7 kb
convertCel.R 100644 7 kb
copyCel.R 100644 2 kb
createCel.R 100644 8 kb
findCdf.R 100644 5 kb
findFiles.R 100644 8 kb
invertMap.R 100644 2 kb
isCelFile.R 100644 2 kb
parseDatHeaderString.R 100644 4 kb
private.assertMap.R 100644 2 kb
private.readCelHeaderV3.R 100644 3 kb
private.readCelHeaderV4.R 100644 3 kb
private.unwrapCelHeaderV4.R 100644 12 kb
private.wrapCelHeaderV4.R 100644 5 kb
readBpmap.R 100644 1 kb
readBpmapHeader.R 100644 0 kb
readBpmapSeqInfo.R 100644 1 kb
readCcg.R 100644 20 kb
readCcgHeader.R 100644 12 kb
readCdf.R 100644 13 kb
readCdfCellIndices.R 100644 8 kb
readCdfDataFrame.R 100644 11 kb
readCdfGroupNames.R 100644 3 kb
readCdfHeader.R 100644 1 kb
readCdfIsPm.R 100644 3 kb
readCdfNbrOfCellsPerUnitGroup.R 100644 3 kb
readCdfQc.R 100644 1 kb
readCdfUnitNames.R 100644 2 kb
readCdfUnits.R 100644 11 kb
readCdfUnitsWriteMap.R 100644 6 kb
readCel.R 100644 5 kb
readCelHeader.R 100644 1 kb
readCelIntensities.R 100644 3 kb
readCelRectangle.R 100644 3 kb
readCelUnits.R 100644 22 kb
readChp.R 100644 0 kb
readClf.R 100644 1 kb
readPgf.R 100644 4 kb
testWriteAndReadEmptyCdf.R 100644 1 kb
testWriteAndReadEmptyCel.R 100644 1 kb
tpmap2bpmap.R 100644 0 kb
traverseCcg.R 100644 6 kb
updateCel.R 100644 13 kb
updateCelUnits.R 100644 6 kb
writeCcg.R 100644 7 kb
writeCdf.R 100644 5 kb
writeCdf.private.R 100644 14 kb
writeCdfHeader.R 100644 4 kb
writeCdfQcUnits.R 100644 4 kb
writeCdfUnits.R 100644 4 kb
writeCelHeader.R 100644 7 kb
writeTpmap.R 100644 2 kb
zzz.R 100644 0 kb
README.md
# affxparser: Affymetrix File Parsing SDK ## Installation R package affxparser is available on [Bioconductor](http://www.bioconductor.org/packages/devel/bioc/html/affxparser.html) and can be installed in R as: ```r source('http://bioconductor.org/biocLite.R') biocLite('affxparser') ``` ### Pre-release version To install the pre-release version that is available in branch `develop`, use: ```r source('http://callr.org/install#HenrikBengtsson/affxparser@develop') ``` This will install the package from source. Because of this and because this package also compiles native code, Windows users need to have [Rtools](https://cran.r-project.org/bin/windows/Rtools/) installed and OS X users need to have [Xcode](https://developer.apple.com/xcode/) installed. ## Software status | Resource: | Bioconductor | Travis CI | Appveyor | | ------------- | ------------------- | -------------- | ---------------- | | _Platforms:_ | _Multiple_ | _Linux & OS X_ | _Windows_ | | R CMD check | <a href="http://bioconductor.org/checkResults/release/bioc-LATEST/affxparser/"><img border="0" src="http://bioconductor.org/shields/build/release/bioc/affxparser.svg" alt="Build status"></a> (release)</br><a href="http://bioconductor.org/checkResults/devel/bioc-LATEST/affxparser/"><img border="0" src="http://bioconductor.org/shields/build/devel/bioc/affxparser.svg" alt="Build status"></a> (devel) | <a href="https://travis-ci.org/HenrikBengtsson/affxparser"><img src="https://travis-ci.org/HenrikBengtsson/affxparser.svg" alt="Build status"></a> | <a href="https://ci.appveyor.com/project/HenrikBengtsson/affxparser"><img src="https://ci.appveyor.com/api/projects/status/github/HenrikBengtsson/affxparser?svg=true" alt="Build status"></a> | | Test coverage | | <a href="https://codecov.io/gh/HenrikBengtsson/affxparser"><img src="https://codecov.io/gh/HenrikBengtsson/affxparser/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> | |