Name Mode Size
..
1._Dictionary.Rd 100644 2 kb
2._Cell_coordinates_and_cell_indices.Rd 100644 4 kb
9._Advanced_-_Cell-index_maps_for_reading_and_writing.Rd 100644 7 kb
affxparser-package.Rd 100644 6 kb
applyCdfGroupFields.Rd 100644 1 kb
applyCdfGroups.Rd 100644 5 kb
arrangeCelFilesByChipType.Rd 100644 2 kb
cdfAddBaseMmCounts.Rd 100644 3 kb
cdfAddPlasqTypes.Rd 100644 2 kb
cdfAddProbeOffsets.Rd 100644 1 kb
cdfGetFields.Rd 100644 1 kb
cdfGetGroups.Rd 100644 1 kb
cdfGtypeCelToPQ.Rd 100644 1 kb
cdfHeaderToCelHeader.Rd 100644 1 kb
cdfMergeAlleles.Rd 100644 2 kb
cdfMergeStrands.Rd 100644 1 kb
cdfMergeToQuartets.Rd 100644 1 kb
cdfOrderBy.Rd 100644 1 kb
cdfOrderColumnsBy.Rd 100644 1 kb
cdfSetDimension.Rd 100644 1 kb
compareCdfs.Rd 100644 1 kb
compareCels.Rd 100644 1 kb
convertCdf.Rd 100644 3 kb
convertCel.Rd 100644 3 kb
copyCel.Rd 100644 1 kb
createCel.Rd 100644 4 kb
findCdf.Rd 100644 3 kb
findFiles.Rd 100644 2 kb
invertMap.Rd 100644 2 kb
isCelFile.Rd 100644 1 kb
parseDatHeaderString.Rd 100644 1 kb
readBpmap.Rd 100644 2 kb
readCcg.Rd 100644 2 kb
readCcgHeader.Rd 100644 1 kb
readCdf.Rd 100644 5 kb
readCdfCellIndices.Rd 100644 3 kb
readCdfDataFrame.Rd 100644 3 kb
readCdfGroupNames.Rd 100644 2 kb
readCdfHeader.Rd 100644 1 kb
readCdfIsPm.Rd 100644 1 kb
readCdfNbrOfCellsPerUnitGroup.Rd 100644 3 kb
readCdfQc.Rd 100644 1 kb
readCdfUnitNames.Rd 100755 1 kb
readCdfUnits.Rd 100755 5 kb
readCdfUnitsWriteMap.Rd 100644 7 kb
readCel.Rd 100644 6 kb
readCelHeader.Rd 100644 3 kb
readCelIntensities.Rd 100644 2 kb
readCelRectangle.Rd 100644 3 kb
readCelUnits.Rd 100644 5 kb
readChp.Rd 100644 1 kb
readClf.Rd 100644 1 kb
readClfEnv.Rd 100644 1 kb
readClfHeader.Rd 100644 1 kb
readPgf.Rd 100644 3 kb
readPgfEnv.Rd 100644 3 kb
readPgfHeader.Rd 100644 1 kb
updateCel.Rd 100644 5 kb
updateCelUnits.Rd 100644 4 kb
writeCdf.Rd 100644 1 kb
writeCdfHeader.Rd 100644 2 kb
writeCdfQcUnits.Rd 100644 1 kb
writeCdfUnits.Rd 100644 1 kb
writeCelHeader.Rd 100644 2 kb
writeTpmap.Rd 100644 1 kb
README.md
# affxparser: Affymetrix File Parsing SDK ## Installation R package affxparser is available on [Bioconductor](http://www.bioconductor.org/packages/devel/bioc/html/affxparser.html) and can be installed in R as: ```r source('http://bioconductor.org/biocLite.R') biocLite('affxparser') ``` ### Pre-release version To install the pre-release version that is available in branch `develop`, use: ```r source('http://callr.org/install#HenrikBengtsson/affxparser@develop') ``` This will install the package from source. Because of this and because this package also compiles native code, Windows users need to have [Rtools](https://cran.r-project.org/bin/windows/Rtools/) installed and OS X users need to have [Xcode](https://developer.apple.com/xcode/) installed. ## Software status | Resource: | Bioconductor | Travis CI | Appveyor | | ------------- | ------------------- | -------------- | ---------------- | | _Platforms:_ | _Multiple_ | _Linux & OS X_ | _Windows_ | | R CMD check | <a href="http://bioconductor.org/checkResults/release/bioc-LATEST/affxparser/"><img border="0" src="http://bioconductor.org/shields/build/release/bioc/affxparser.svg" alt="Build status"></a> (release)</br><a href="http://bioconductor.org/checkResults/devel/bioc-LATEST/affxparser/"><img border="0" src="http://bioconductor.org/shields/build/devel/bioc/affxparser.svg" alt="Build status"></a> (devel) | <a href="https://travis-ci.org/HenrikBengtsson/affxparser"><img src="https://travis-ci.org/HenrikBengtsson/affxparser.svg" alt="Build status"></a> | <a href="https://ci.appveyor.com/project/HenrikBengtsson/affxparser"><img src="https://ci.appveyor.com/api/projects/status/github/HenrikBengtsson/affxparser?svg=true" alt="Build status"></a> | | Test coverage | | <a href="https://codecov.io/gh/HenrikBengtsson/affxparser"><img src="https://codecov.io/gh/HenrikBengtsson/affxparser/branch/develop/graph/badge.svg" alt="Coverage Status"/></a> | |