1. affxparser
  2. Commit e9f9e80bd878fa4bcd5f2e73188cb6098f36988e
Browse code

Updated to Fusion 1.0.8. I have only tested it on my powerbook and on Shadowfax and furthermore I have only tested that it installs - no actual read and/or write tests. We (perhaps me?) should add a test suite using some binary CELs and CDFs.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser@20919 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 31/10/2006 18:36:39
Showing 342 changed files
DESCRIPTION
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... ... 
@@ -1,6 +1,6 @@
1 1 
 Package: affxparser
2 
-Version: 1.7.0
3 
-Date: 2006-10-25
2 
+Version: 1.7.1
3 
+Date: 2006-10-31
4 4 
 Title: Affymetrix File Parsing SDK
5 5 
 Author: Henrik Bengtsson, James Bullard, Kasper Daniel Hansen
6 6 
 Maintainer: Kasper Daniel Hansen <khansen@stat.berkeley.edu>
inst/_Makefile
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... ... 
@@ -77,6 +77,7 @@ SOURCES.fusion = \
77 77 
 	fusion_sdk/file/CELFileData.cpp\
78 78 
 	fusion_sdk/file/CELFileWriter.cpp\
79 79 
 	fusion_sdk/file/BPMAPFileData.cpp\
80 
+	fusion_sdk/file/BPMAPFileWriter.cpp\
80 81 
 	fusion_sdk/file/FileIO.cpp\
81 82 
 	fusion_sdk/file/FileWriter.cpp\
82 83
inst/info/README
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... ... 
@@ -1,3 +1,5 @@
1 
-Using Fusion SDK release 1.0.7 from July 2006.
1 
+Using Fusion SDK release 1.0.8 from Spetember 2006.
2 2
3 
-The fusion2affxparser.sh script was used to trim the SDK.
3 
+The fusion2affxparser.sh script was used to trim the SDK.
4 
+In addition we changed file/CELFileData.h to allow for compiling
5 
+using gcc-4.0.3 supplied with R-2.4.0
inst/info/fusion2affxparser.sh
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... ... 
@@ -16,3 +16,6 @@ rm -R TestDataFiles file_formats interface_docs java \
16 16 
  calvin_files/utils/test calvin_files/utils/data\
17 17 
  calvin_files/writers/test calvin_files/writers/data
18 18 
 cd -
19 
+diff -rq sdk /Users/kdh/Work/bioc/affxparser/src/fusion_sdk | grep Only | grep -v svn
20 
+
21 
+
src/fusion_sdk/calvin_files/array/src/ArrayAttributes.cpp
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... ... 
@@ -1,22 +1,22 @@
1 
-/////////////////////////////////////////////////////////////////
1 
+////////////////////////////////////////////////////////////////
2 2 
 //
3 3 
 // Copyright (C) 2005 Affymetrix, Inc.
4 4 
 //
5 5 
 // This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
10 9 
 // This library is distributed in the hope that it will be useful, but
11 10 
 // WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 11 
 // or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 12 
 // for more details.
14 
-//
13 
+//
15 14 
 // You should have received a copy of the GNU Lesser General Public License
16 15 
 // along with this library; if not, write to the Free Software Foundation, Inc.,
17 16 
 // 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 17 
 //
19 
-/////////////////////////////////////////////////////////////////
18 
+////////////////////////////////////////////////////////////////
19 
+
20 20
21 21 
 #include "ArrayAttributes.h"
22 22
src/fusion_sdk/calvin_files/array/src/ArrayAttributes.h
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@@ -1,22 +1,22 @@
1 
-/////////////////////////////////////////////////////////////////
1 
+////////////////////////////////////////////////////////////////
2 2 
 //
3 3 
 // Copyright (C) 2005 Affymetrix, Inc.
4 4 
 //
5 5 
 // This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
10 9 
 // This library is distributed in the hope that it will be useful, but
11 10 
 // WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 11 
 // or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 12 
 // for more details.
14 
-//
13 
+//
15 14 
 // You should have received a copy of the GNU Lesser General Public License
16 15 
 // along with this library; if not, write to the Free Software Foundation, Inc.,
17 16 
 // 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 17 
 //
19 
-/////////////////////////////////////////////////////////////////
18 
+////////////////////////////////////////////////////////////////
19 
+
20 20
21 21 
 #ifndef _ArrayAttributes_HEADER_
22 22 
 #define _ArrayAttributes_HEADER_
src/fusion_sdk/calvin_files/array/src/ArrayAudit.cpp
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@@ -1,52 +1,52 @@
1 
-/////////////////////////////////////////////////////////////////
2 
-//
3 
-// Copyright (C) 2005 Affymetrix, Inc.
4 
-//
5 
-// This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
10 
-// This library is distributed in the hope that it will be useful, but
11 
-// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 
-// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 
-// for more details.
14 
-//
15 
-// You should have received a copy of the GNU Lesser General Public License
16 
-// along with this library; if not, write to the Free Software Foundation, Inc.,
17 
-// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 
-//
19 
-/////////////////////////////////////////////////////////////////
20 
-
21 
-#include "ArrayAudit.h"
22 
-
23 
-using namespace affymetrix_calvin_array;
24 
-
25 
-/*
26 
- * Initialize the class.
27 
- */
28 
-ArrayAuditEntry::ArrayAuditEntry()
29 
-{
30 
-}
31 
-
32 
-/*
33 
- * Clean up.
34 
- */
35 
-ArrayAuditEntry::~ArrayAuditEntry()
36 
-{
37 
-	Clear();
38 
-}
39 
-
40 
-/*!
41 
- * Clears each member.
42 
- */
43 
-void ArrayAuditEntry::Clear()
44 
-{
45 
-	userName = L"";
46 
-	actionType = "";
47 
-	arrayGuid = "";
48 
-	inputFileGuids.clear();
49 
-	outputFileGuids.clear();
50 
-	actionParameters.clear();
51 
-	actionDateTime.Clear();
52 
-}
1 
+////////////////////////////////////////////////////////////////
2 
+//
3 
+// Copyright (C) 2005 Affymetrix, Inc.
4 
+//
5 
+// This library is free software; you can redistribute it and/or modify
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
9 
+// This library is distributed in the hope that it will be useful, but
10 
+// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
11 
+// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
12 
+// for more details.
13 
+//
14 
+// You should have received a copy of the GNU Lesser General Public License
15 
+// along with this library; if not, write to the Free Software Foundation, Inc.,
16 
+// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 
+//
18 
+////////////////////////////////////////////////////////////////
19 
+
20 
+
21 
+#include "ArrayAudit.h"
22 
+
23 
+using namespace affymetrix_calvin_array;
24 
+
25 
+/*
26 
+ * Initialize the class.
27 
+ */
28 
+ArrayAuditEntry::ArrayAuditEntry()
29 
+{
30 
+}
31 
+
32 
+/*
33 
+ * Clean up.
34 
+ */
35 
+ArrayAuditEntry::~ArrayAuditEntry()
36 
+{
37 
+	Clear();
38 
+}
39 
+
40 
+/*!
41 
+ * Clears each member.
42 
+ */
43 
+void ArrayAuditEntry::Clear()
44 
+{
45 
+	userName = L"";
46 
+	actionType = "";
47 
+	arrayGuid = "";
48 
+	inputFileGuids.clear();
49 
+	outputFileGuids.clear();
50 
+	actionParameters.clear();
51 
+	actionDateTime.Clear();
52 
+}
src/fusion_sdk/calvin_files/array/src/ArrayAudit.h
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@@ -1,124 +1,124 @@
1 
-/////////////////////////////////////////////////////////////////
2 
-//
3 
-// Copyright (C) 2005 Affymetrix, Inc.
4 
-//
5 
-// This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
10 
-// This library is distributed in the hope that it will be useful, but
11 
-// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 
-// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 
-// for more details.
14 
-//
15 
-// You should have received a copy of the GNU Lesser General Public License
16 
-// along with this library; if not, write to the Free Software Foundation, Inc.,
17 
-// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 
-//
19 
-/////////////////////////////////////////////////////////////////
20 
-
21 
-#ifndef _ArrayAudit_HEADER_
22 
-#define _ArrayAudit_HEADER_
23 
-
24 
-/*! \file ArrayAudit.h This file provides interfaces for an audit item in an array file.
25 
- */
26 
-
27 
-#include "AffymetrixBaseTypes.h"
28 
-#include "AffymetrixGuid.h"
29 
-#include "Parameter.h"
30 
-#include "DateTime.h"
31 
-#include <string>
32 
-#include <list>
33 
-
34 
-namespace affymetrix_calvin_array
35 
-{
36 
-
37 
-/*! A class to store an audit entry associated with an array. */
38 
-class ArrayAuditEntry
39 
-{
40 
-public:
41 
-	/*! Constructor */
42 
-	ArrayAuditEntry();
43 
-
44 
-	/*! Destructor */
45 
-	~ArrayAuditEntry();
46 
-
47 
-protected:
48 
-	/*! The user name creating the audit entry. */
49 
-	std::wstring userName;
50 
-
51 
-	/*! The type of action being performed. */
52 
-	affymetrix_calvin_utilities::AffymetrixGuidType actionType;
53 
-
54 
-	/*! The guid to the physical array associated with the action. */
55 
-	affymetrix_calvin_utilities::AffymetrixGuidType arrayGuid;
56 
-
57 
-	/*! A list of guids for the input file ids to the action. */
58 
-	affymetrix_calvin_utilities::AffymetrixGuidTypeList inputFileGuids;
59 
-
60 
-	/*! A list of guids for the output file ids from the action. */
61 
-	affymetrix_calvin_utilities::AffymetrixGuidTypeList outputFileGuids;
62 
-
63 
-	/*! A list of parameters associated with the action. */
64 
-	affymetrix_calvin_parameter::ParameterNameValuePairList actionParameters;
65 
-
66 
-	/*! The date and time of the action. */
67 
-	affymetrix_calvin_utilities::DateTime actionDateTime;
68 
-
69 
-public:
70 
-	/*! The user name associated with the audit entry.
71 
-	 *
72 
-	 * @return The user name associated with the audit entry.
73 
-	 */
74 
-	std::wstring &UserName() { return userName; }
75 
-
76 
-	/*! The date and time of the action.
77 
-	 *
78 
-	 * @return The date and time of the action.
79 
-	 */
80 
-	affymetrix_calvin_utilities::DateTime &DateTime() { return actionDateTime; }
81 
-
82 
-	/*! The type of action.
83 
-	 *
84 
-	 * @return The type of action.
85 
-	 */
86 
-	affymetrix_calvin_utilities::AffymetrixGuidType &ActionType() { return actionType; }
87 
-
88 
-	/*! The id of the physical array associated with the action.
89 
-	 *
90 
-	 * @return The physical array id.
91 
-	 */
92 
-	affymetrix_calvin_utilities::AffymetrixGuidType &ArrayGuid() { return arrayGuid; }
93 
-
94 
-	/*! The list of guids for the input files to the action.
95 
-	*
96 
-	* @return  The list of guids for the input files to the action.
97 
-	*/
98 
-	affymetrix_calvin_utilities::AffymetrixGuidTypeList &InputFileGuids() { return inputFileGuids; }
99 
-
100 
-	/*! The list of guids for the input files to the action.
101 
-	*
102 
-	* @return  The list of guids for the output files of the action.
103 
-	*/
104 
-	affymetrix_calvin_utilities::AffymetrixGuidTypeList &OutputFileGuids() { return outputFileGuids; }
105 
-
106 
-	/*! The list of parameters associated with the action.
107 
-	 *
108 
-	 * @return The list of parameters associated with the action.
109 
-	 */
110 
-	affymetrix_calvin_parameter::ParameterNameValuePairList &ActionParameters() { return actionParameters; }
111 
-
112 
-	/*! Clears the member objects. */
113 
-	void Clear();
114 
-};
115 
-
116 
-/*! An STL vector of tbd objects */
117 
-typedef std::vector<ArrayAuditEntry> ArrayAuditEntryVector;
118 
-
119 
-/*! An STL list of tbd objects */
120 
-typedef std::list<ArrayAuditEntry> ArrayAuditEntryList;
121 
-
122 
-};
123 
-
124 
-#endif // _ArrayAudit_HEADER_
1 
+////////////////////////////////////////////////////////////////
2 
+//
3 
+// Copyright (C) 2005 Affymetrix, Inc.
4 
+//
5 
+// This library is free software; you can redistribute it and/or modify
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
9 
+// This library is distributed in the hope that it will be useful, but
10 
+// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
11 
+// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
12 
+// for more details.
13 
+//
14 
+// You should have received a copy of the GNU Lesser General Public License
15 
+// along with this library; if not, write to the Free Software Foundation, Inc.,
16 
+// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 
+//
18 
+////////////////////////////////////////////////////////////////
19 
+
20 
+
21 
+#ifndef _ArrayAudit_HEADER_
22 
+#define _ArrayAudit_HEADER_
23 
+
24 
+/*! \file ArrayAudit.h This file provides interfaces for an audit item in an array file.
25 
+ */
26 
+
27 
+#include "AffymetrixBaseTypes.h"
28 
+#include "AffymetrixGuid.h"
29 
+#include "Parameter.h"
30 
+#include "DateTime.h"
31 
+#include <string>
32 
+#include <list>
33 
+
34 
+namespace affymetrix_calvin_array
35 
+{
36 
+
37 
+/*! A class to store an audit entry associated with an array. */
38 
+class ArrayAuditEntry
39 
+{
40 
+public:
41 
+	/*! Constructor */
42 
+	ArrayAuditEntry();
43 
+
44 
+	/*! Destructor */
45 
+	~ArrayAuditEntry();
46 
+
47 
+protected:
48 
+	/*! The user name creating the audit entry. */
49 
+	std::wstring userName;
50 
+
51 
+	/*! The type of action being performed. */
52 
+	affymetrix_calvin_utilities::AffymetrixGuidType actionType;
53 
+
54 
+	/*! The guid to the physical array associated with the action. */
55 
+	affymetrix_calvin_utilities::AffymetrixGuidType arrayGuid;
56 
+
57 
+	/*! A list of guids for the input file ids to the action. */
58 
+	affymetrix_calvin_utilities::AffymetrixGuidTypeList inputFileGuids;
59 
+
60 
+	/*! A list of guids for the output file ids from the action. */
61 
+	affymetrix_calvin_utilities::AffymetrixGuidTypeList outputFileGuids;
62 
+
63 
+	/*! A list of parameters associated with the action. */
64 
+	affymetrix_calvin_parameter::ParameterNameValuePairList actionParameters;
65 
+
66 
+	/*! The date and time of the action. */
67 
+	affymetrix_calvin_utilities::DateTime actionDateTime;
68 
+
69 
+public:
70 
+	/*! The user name associated with the audit entry.
71 
+	 *
72 
+	 * @return The user name associated with the audit entry.
73 
+	 */
74 
+	std::wstring &UserName() { return userName; }
75 
+
76 
+	/*! The date and time of the action.
77 
+	 *
78 
+	 * @return The date and time of the action.
79 
+	 */
80 
+	affymetrix_calvin_utilities::DateTime &DateTime() { return actionDateTime; }
81 
+
82 
+	/*! The type of action.
83 
+	 *
84 
+	 * @return The type of action.
85 
+	 */
86 
+	affymetrix_calvin_utilities::AffymetrixGuidType &ActionType() { return actionType; }
87 
+
88 
+	/*! The id of the physical array associated with the action.
89 
+	 *
90 
+	 * @return The physical array id.
91 
+	 */
92 
+	affymetrix_calvin_utilities::AffymetrixGuidType &ArrayGuid() { return arrayGuid; }
93 
+
94 
+	/*! The list of guids for the input files to the action.
95 
+	*
96 
+	* @return  The list of guids for the input files to the action.
97 
+	*/
98 
+	affymetrix_calvin_utilities::AffymetrixGuidTypeList &InputFileGuids() { return inputFileGuids; }
99 
+
100 
+	/*! The list of guids for the input files to the action.
101 
+	*
102 
+	* @return  The list of guids for the output files of the action.
103 
+	*/
104 
+	affymetrix_calvin_utilities::AffymetrixGuidTypeList &OutputFileGuids() { return outputFileGuids; }
105 
+
106 
+	/*! The list of parameters associated with the action.
107 
+	 *
108 
+	 * @return The list of parameters associated with the action.
109 
+	 */
110 
+	affymetrix_calvin_parameter::ParameterNameValuePairList &ActionParameters() { return actionParameters; }
111 
+
112 
+	/*! Clears the member objects. */
113 
+	void Clear();
114 
+};
115 
+
116 
+/*! An STL vector of tbd objects */
117 
+typedef std::vector<ArrayAuditEntry> ArrayAuditEntryVector;
118 
+
119 
+/*! An STL list of tbd objects */
120 
+typedef std::list<ArrayAuditEntry> ArrayAuditEntryList;
121 
+
122 
+};
123 
+
124 
+#endif // _ArrayAudit_HEADER_
src/fusion_sdk/calvin_files/array/src/ArrayAuditActionTypes.h
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@@ -1,46 +1,46 @@
1 
-/////////////////////////////////////////////////////////////////
2 
-//
3 
-// Copyright (C) 2005 Affymetrix, Inc.
4 
-//
5 
-// This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
10 
-// This library is distributed in the hope that it will be useful, but
11 
-// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 
-// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 
-// for more details.
14 
-//
15 
-// You should have received a copy of the GNU Lesser General Public License
16 
-// along with this library; if not, write to the Free Software Foundation, Inc.,
17 
-// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 
-//
19 
-/////////////////////////////////////////////////////////////////
20 
-
21 
-#ifndef _ArrayAuditActionTypes_HEADER_
22 
-#define _ArrayAuditActionTypes_HEADER_
23 
-
24 
-/*! \file ArrayAuditActionTypes.h Defines constants for various array file audit actions.
25 
- */
26 
-
27 
-#include "AffymetrixBaseTypes.h"
28 
-
29 
-namespace affymetrix_calvin_array
30 
-{
31 
-
32 
-/*! Initial creation of an array file. */
33 
-static const int32_t ARRAY_FILE_CREATEION_ACTION = 1;
34 
-
35 
-/*! Attribute update action. */
36 
-static const int32_t ARRAY_FILE_ATTRIBUTE_UPDATE_ACTION = 2;
37 
-
38 
-/*! Fluidics instrument control action. */
39 
-static const int32_t FLUIDICS_INSTRUMENT_CONTROL_ACTION = 3;
40 
-
41 
-/*! Scanner instrument control action. */
42 
-static const int32_t SCAN_INSTRUMENT_CONTROL_ACTION = 4;
43 
-
44 
-};
45 
-
46 
-#endif // _ArrayAuditActionTypes_HEADER_
1 
+////////////////////////////////////////////////////////////////
2 
+//
3 
+// Copyright (C) 2005 Affymetrix, Inc.
4 
+//
5 
+// This library is free software; you can redistribute it and/or modify
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
9 
+// This library is distributed in the hope that it will be useful, but
10 
+// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
11 
+// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
12 
+// for more details.
13 
+//
14 
+// You should have received a copy of the GNU Lesser General Public License
15 
+// along with this library; if not, write to the Free Software Foundation, Inc.,
16 
+// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 
+//
18 
+////////////////////////////////////////////////////////////////
19 
+
20 
+
21 
+#ifndef _ArrayAuditActionTypes_HEADER_
22 
+#define _ArrayAuditActionTypes_HEADER_
23 
+
24 
+/*! \file ArrayAuditActionTypes.h Defines constants for various array file audit actions.
25 
+ */
26 
+
27 
+#include "AffymetrixBaseTypes.h"
28 
+
29 
+namespace affymetrix_calvin_array
30 
+{
31 
+
32 
+/*! Initial creation of an array file. */
33 
+static const int32_t ARRAY_FILE_CREATEION_ACTION = 1;
34 
+
35 
+/*! Attribute update action. */
36 
+static const int32_t ARRAY_FILE_ATTRIBUTE_UPDATE_ACTION = 2;
37 
+
38 
+/*! Fluidics instrument control action. */
39 
+static const int32_t FLUIDICS_INSTRUMENT_CONTROL_ACTION = 3;
40 
+
41 
+/*! Scanner instrument control action. */
42 
+static const int32_t SCAN_INSTRUMENT_CONTROL_ACTION = 4;
43 
+
44 
+};
45 
+
46 
+#endif // _ArrayAuditActionTypes_HEADER_
src/fusion_sdk/calvin_files/array/src/ArrayData.cpp
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@@ -1,53 +1,53 @@
1 
-/////////////////////////////////////////////////////////////////
2 
-//
3 
-// Copyright (C) 2005 Affymetrix, Inc.
4 
-//
5 
-// This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
10 
-// This library is distributed in the hope that it will be useful, but
11 
-// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 
-// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 
-// for more details.
14 
-//
15 
-// You should have received a copy of the GNU Lesser General Public License
16 
-// along with this library; if not, write to the Free Software Foundation, Inc.,
17 
-// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 
-//
19 
-/////////////////////////////////////////////////////////////////
20 
-
21 
-#include "ArrayData.h"
22 
-
23 
-using namespace affymetrix_calvin_array;
24 
-
25 
-/*
26 
- * Initialize the class.
27 
- */
28 
-ArrayData::ArrayData()
29 
-{
30 
-}
31 
-
32 
-/*
33 
- * Clean up.
34 
- */
35 
-ArrayData::~ArrayData()
36 
-{
37 
-	Clear();
38 
-}
39 
-
40 
-/*
41 
- * Clears the member variables.
42 
- */
43 
-void ArrayData::Clear()
44 
-{
45 
-	physicalArraysAttributes.clear();
46 
-	userAttributes.clear();
47 
-	fileId="";
48 
-	dataTypeId="";
49 
-	createdStep=NoStep;
50 
-	initialProject=L"";
51 
-	creationDateTime=L"";
52 
-	createdBy=L"";
53 
-}
1 
+////////////////////////////////////////////////////////////////
2 
+//
3 
+// Copyright (C) 2005 Affymetrix, Inc.
4 
+//
5 
+// This library is free software; you can redistribute it and/or modify
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
9 
+// This library is distributed in the hope that it will be useful, but
10 
+// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
11 
+// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
12 
+// for more details.
13 
+//
14 
+// You should have received a copy of the GNU Lesser General Public License
15 
+// along with this library; if not, write to the Free Software Foundation, Inc.,
16 
+// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 
+//
18 
+////////////////////////////////////////////////////////////////
19 
+
20 
+
21 
+#include "ArrayData.h"
22 
+
23 
+using namespace affymetrix_calvin_array;
24 
+
25 
+/*
26 
+ * Initialize the class.
27 
+ */
28 
+ArrayData::ArrayData()
29 
+{
30 
+}
31 
+
32 
+/*
33 
+ * Clean up.
34 
+ */
35 
+ArrayData::~ArrayData()
36 
+{
37 
+	Clear();
38 
+}
39 
+
40 
+/*
41 
+ * Clears the member variables.
42 
+ */
43 
+void ArrayData::Clear()
44 
+{
45 
+	physicalArraysAttributes.clear();
46 
+	userAttributes.clear();
47 
+	fileId="";
48 
+	dataTypeId="";
49 
+	createdStep=NoStep;
50 
+	initialProject=L"";
51 
+	creationDateTime=L"";
52 
+	createdBy=L"";
53 
+}
src/fusion_sdk/calvin_files/array/src/ArrayData.h
History View file @ e9f9e80
... ... 
@@ -1,121 +1,121 @@
1 
-/////////////////////////////////////////////////////////////////
2 
-//
3 
-// Copyright (C) 2005 Affymetrix, Inc.
4 
-//
5 
-// This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
10 
-// This library is distributed in the hope that it will be useful, but
11 
-// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 
-// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 
-// for more details.
14 
-//
15 
-// You should have received a copy of the GNU Lesser General Public License
16 
-// along with this library; if not, write to the Free Software Foundation, Inc.,
17 
-// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 
-//
19 
-/////////////////////////////////////////////////////////////////
20 
-
21 
-#ifndef _ArrayData_HEADER_
22 
-#define _ArrayData_HEADER_
23 
-
24 
-/*! \file ArrayData.h This file provides interfaces to store information in an array file.
25 
- */
26 
-
27 
-#include "ArrayId.h"
28 
-#include "AffymetrixBaseTypes.h"
29 
-#include "AffymetrixGuid.h"
30 
-#include "Parameter.h"
31 
-#include "ParameterNameValueType.h"
32 
-#include "ArrayAttributes.h"
33 
-#include <string>
34 
-
35 
-namespace affymetrix_calvin_array
36 
-{
37 
-
38 
-/*! This class provides interfaces to store array information. */
39 
-class ArrayData
40 
-{
41 
-public:
42 
-	/*! Constructor */
43 
-	ArrayData();
44 
-
45 
-	/*! Destructor */
46 
-	~ArrayData();
47 
-
48 
-protected:
49 
-	/*! A unique idendifier for the array set object */
50 
-	affymetrix_calvin_utilities::AffymetrixGuidType fileId;
51 
-
52 
-	/*! An identifier to the type of data stored in the file */
53 
-	affymetrix_calvin_utilities::AffymetrixGuidType dataTypeId;
54 
-
55 
-	/*! The step in Calvin that created the array set data. */
56 
-	CreateStep createdStep;
57 
-
58 
-	/*! The name of the project that initially created the array set data. */
59 
-	std::wstring initialProject;
60 
-
61 
-	/*! The date and time of initial creation. */
62 
-	std::wstring creationDateTime;
63 
-
64 
-	/*! The user who created the data object. */
65 
-	std::wstring createdBy;
66 
-
67 
-	/*! The arrays attributes for the arrays in the set */
68 
-	ArrayAttributesVector physicalArraysAttributes;
69 
-
70 
-	/*! The user attributes */
71 
-	affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredTypeList userAttributes;
72 
-
73 
-public:
74 
-
75 
-	/*! The unique idendifier for the array set.
76 
-	 * @return The unique idendifier for the array set.
77 
-	 */
78 
-	affymetrix_calvin_utilities::AffymetrixGuidType &ArraySetFileIdentifier() { return fileId; }
79 
-
80 
-	/*! The identifier of the type of data stored in the file.
81 
-	 * @return The identifier of the type of data.
82 
-	 */
83 
-	affymetrix_calvin_utilities::AffymetrixGuidType &DataTypeIdentifier() { return dataTypeId; }
84 
-
85 
-	/*! The step in Calvin that created the array set data.
86 
-	 * @return The step in calvin that create the array set data.
87 
-	 */
88 
-	CreateStep &CreatedStep() { return createdStep; }
89 
-
90 
-	/*! The name of the project that initially created the array set data.
91 
-	 * @return The project name.
92 
-	 */
93 
-	std::wstring &InitialProject() { return initialProject; }
94 
-
95 
-	/*! The date and time of initial creation.
96 
-	 * @return The creation date and time.
97 
-	 */
98 
-	std::wstring &CreationDateTime() { return creationDateTime; }
99 
-
100 
-	/*! The user who created the data object.
101 
-	 * @return The user name.
102 
-	 */
103 
-	std::wstring &CreatedBy() { return createdBy; }
104 
-
105 
-	/*! The arrays attributes. Each array in a set will have its own attributes.
106 
-	 * @return The vector of arrays attributes.
107 
-	 */
108 
-	ArrayAttributesVector &PhysicalArraysAttributes() { return physicalArraysAttributes; }
109 
-
110 
-	/*! The user attributes.
111 
-	 * @return The vector of user attributes.
112 
-	 */
113 
-	affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredTypeList &UserAttributes() { return userAttributes; }
114 
-
115 
-	/*! Clears the member objects. */
116 
-	void Clear();
117 
-};
118 
-
119 
-};
120 
-
121 
-#endif // _ArrayData_HEADER_
1 
+////////////////////////////////////////////////////////////////
2 
+//
3 
+// Copyright (C) 2005 Affymetrix, Inc.
4 
+//
5 
+// This library is free software; you can redistribute it and/or modify
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
9 
+// This library is distributed in the hope that it will be useful, but
10 
+// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
11 
+// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
12 
+// for more details.
13 
+//
14 
+// You should have received a copy of the GNU Lesser General Public License
15 
+// along with this library; if not, write to the Free Software Foundation, Inc.,
16 
+// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 
+//
18 
+////////////////////////////////////////////////////////////////
19 
+
20 
+
21 
+#ifndef _ArrayData_HEADER_
22 
+#define _ArrayData_HEADER_
23 
+
24 
+/*! \file ArrayData.h This file provides interfaces to store information in an array file.
25 
+ */
26 
+
27 
+#include "ArrayId.h"
28 
+#include "AffymetrixBaseTypes.h"
29 
+#include "AffymetrixGuid.h"
30 
+#include "Parameter.h"
31 
+#include "ParameterNameValueType.h"
32 
+#include "ArrayAttributes.h"
33 
+#include <string>
34 
+
35 
+namespace affymetrix_calvin_array
36 
+{
37 
+
38 
+/*! This class provides interfaces to store array information. */
39 
+class ArrayData
40 
+{
41 
+public:
42 
+	/*! Constructor */
43 
+	ArrayData();
44 
+
45 
+	/*! Destructor */
46 
+	~ArrayData();
47 
+
48 
+protected:
49 
+	/*! A unique idendifier for the array set object */
50 
+	affymetrix_calvin_utilities::AffymetrixGuidType fileId;
51 
+
52 
+	/*! An identifier to the type of data stored in the file */
53 
+	affymetrix_calvin_utilities::AffymetrixGuidType dataTypeId;
54 
+
55 
+	/*! The step in Calvin that created the array set data. */
56 
+	CreateStep createdStep;
57 
+
58 
+	/*! The name of the project that initially created the array set data. */
59 
+	std::wstring initialProject;
60 
+
61 
+	/*! The date and time of initial creation. */
62 
+	std::wstring creationDateTime;
63 
+
64 
+	/*! The user who created the data object. */
65 
+	std::wstring createdBy;
66 
+
67 
+	/*! The arrays attributes for the arrays in the set */
68 
+	ArrayAttributesVector physicalArraysAttributes;
69 
+
70 
+	/*! The user attributes */
71 
+	affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredTypeList userAttributes;
72 
+
73 
+public:
74 
+
75 
+	/*! The unique idendifier for the array set.
76 
+	 * @return The unique idendifier for the array set.
77 
+	 */
78 
+	affymetrix_calvin_utilities::AffymetrixGuidType &ArraySetFileIdentifier() { return fileId; }
79 
+
80 
+	/*! The identifier of the type of data stored in the file.
81 
+	 * @return The identifier of the type of data.
82 
+	 */
83 
+	affymetrix_calvin_utilities::AffymetrixGuidType &DataTypeIdentifier() { return dataTypeId; }
84 
+
85 
+	/*! The step in Calvin that created the array set data.
86 
+	 * @return The step in calvin that create the array set data.
87 
+	 */
88 
+	CreateStep &CreatedStep() { return createdStep; }
89 
+
90 
+	/*! The name of the project that initially created the array set data.
91 
+	 * @return The project name.
92 
+	 */
93 
+	std::wstring &InitialProject() { return initialProject; }
94 
+
95 
+	/*! The date and time of initial creation.
96 
+	 * @return The creation date and time.
97 
+	 */
98 
+	std::wstring &CreationDateTime() { return creationDateTime; }
99 
+
100 
+	/*! The user who created the data object.
101 
+	 * @return The user name.
102 
+	 */
103 
+	std::wstring &CreatedBy() { return createdBy; }
104 
+
105 
+	/*! The arrays attributes. Each array in a set will have its own attributes.
106 
+	 * @return The vector of arrays attributes.
107 
+	 */
108 
+	ArrayAttributesVector &PhysicalArraysAttributes() { return physicalArraysAttributes; }
109 
+
110 
+	/*! The user attributes.
111 
+	 * @return The vector of user attributes.
112 
+	 */
113 
+	affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredTypeList &UserAttributes() { return userAttributes; }
114 
+
115 
+	/*! Clears the member objects. */
116 
+	void Clear();
117 
+};
118 
+
119 
+};
120 
+
121 
+#endif // _ArrayData_HEADER_
src/fusion_sdk/calvin_files/array/src/ArrayId.h
History View file @ e9f9e80
... ... 
@@ -1,22 +1,22 @@
1 
-/////////////////////////////////////////////////////////////////
1 
+////////////////////////////////////////////////////////////////
2 2 
 //
3 3 
 // Copyright (C) 2005 Affymetrix, Inc.
4 4 
 //
5 5 
 // This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
10 9 
 // This library is distributed in the hope that it will be useful, but
11 10 
 // WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 11 
 // or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 12 
 // for more details.
14 
-//
13 
+//
15 14 
 // You should have received a copy of the GNU Lesser General Public License
16 15 
 // along with this library; if not, write to the Free Software Foundation, Inc.,
17 16 
 // 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 17 
 //
19 
-/////////////////////////////////////////////////////////////////
18 
+////////////////////////////////////////////////////////////////
19 
+
20 20
21 21 
 #ifndef _ArrayId_HEADER_
22 22 
 #define _ArrayId_HEADER_
src/fusion_sdk/calvin_files/array/src/ArrayMedia.cpp
History View file @ e9f9e80
... ... 
@@ -1,65 +1,65 @@
1 
-/////////////////////////////////////////////////////////////////
2 
-//
3 
-// Copyright (C) 2005 Affymetrix, Inc.
4 
-//
5 
-// This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
10 
-// This library is distributed in the hope that it will be useful, but
11 
-// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 
-// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 
-// for more details.
14 
-//
15 
-// You should have received a copy of the GNU Lesser General Public License
16 
-// along with this library; if not, write to the Free Software Foundation, Inc.,
17 
-// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 
-//
19 
-/////////////////////////////////////////////////////////////////
20 
-
21 
-#include "ArrayMedia.h"
22 
-
23 
-using namespace affymetrix_calvin_array;
24 
-
25 
-/*! The GeneChip cartridge. */
26 
-#define MEDIA_TYPE_CARTRIDGE std::wstring(L"Cartridge")
27 
-
28 
-/*! A 96 well plate or strip. */
29 
-#define MEDIA_TYPE_PLATE_OR_STRIP std::wstring(L"PlateOrStrip")
30 
-
31 
-/*
32 
- * Convert the media type to a string.
33 
- */
34 
-std::wstring affymetrix_calvin_array::MediaToString(ArrayMedia media)
35 
-{
36 
-	switch (media)
37 
-	{
38 
-	case CartridgeMedia:
39 
-		return MEDIA_TYPE_CARTRIDGE;
40 
-		break;
41 
-
42 
-	case PlateOrStripMedia:
43 
-		return MEDIA_TYPE_PLATE_OR_STRIP;
44 
-		break;
45 
-
46 
-	default:
47 
-		return L"";
48 
-		break;
49 
-	}
50 
-}
51 
-
52 
-/*
53 
- * Convert the string to media type.
54 
- */
55 
-ArrayMedia affymetrix_calvin_array::MediaFromString(const std::wstring &media)
56 
-{
57 
-	if (media == MEDIA_TYPE_CARTRIDGE)
58 
-		return CartridgeMedia;
59 
-
60 
-	else if (media == MEDIA_TYPE_PLATE_OR_STRIP)
61 
-		return PlateOrStripMedia;
62 
-
63 
-	else
64 
-		return CartridgeMedia;
65 
-}
1 
+////////////////////////////////////////////////////////////////
2 
+//
3 
+// Copyright (C) 2005 Affymetrix, Inc.
4 
+//
5 
+// This library is free software; you can redistribute it and/or modify
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
9 
+// This library is distributed in the hope that it will be useful, but
10 
+// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
11 
+// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
12 
+// for more details.
13 
+//
14 
+// You should have received a copy of the GNU Lesser General Public License
15 
+// along with this library; if not, write to the Free Software Foundation, Inc.,
16 
+// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 
+//
18 
+////////////////////////////////////////////////////////////////
19 
+
20 
+
21 
+#include "ArrayMedia.h"
22 
+
23 
+using namespace affymetrix_calvin_array;
24 
+
25 
+/*! The GeneChip cartridge. */
26 
+#define MEDIA_TYPE_CARTRIDGE std::wstring(L"Cartridge")
27 
+
28 
+/*! A 96 well plate or strip. */
29 
+#define MEDIA_TYPE_PLATE_OR_STRIP std::wstring(L"PlateOrStrip")
30 
+
31 
+/*
32 
+ * Convert the media type to a string.
33 
+ */
34 
+std::wstring affymetrix_calvin_array::MediaToString(ArrayMedia media)
35 
+{
36 
+	switch (media)
37 
+	{
38 
+	case CartridgeMedia:
39 
+		return MEDIA_TYPE_CARTRIDGE;
40 
+		break;
41 
+
42 
+	case PlateOrStripMedia:
43 
+		return MEDIA_TYPE_PLATE_OR_STRIP;
44 
+		break;
45 
+
46 
+	default:
47 
+		return L"";
48 
+		break;
49 
+	}
50 
+}
51 
+
52 
+/*
53 
+ * Convert the string to media type.
54 
+ */
55 
+ArrayMedia affymetrix_calvin_array::MediaFromString(const std::wstring &media)
56 
+{
57 
+	if (media == MEDIA_TYPE_CARTRIDGE)
58 
+		return CartridgeMedia;
59 
+
60 
+	else if (media == MEDIA_TYPE_PLATE_OR_STRIP)
61 
+		return PlateOrStripMedia;
62 
+
63 
+	else
64 
+		return CartridgeMedia;
65 
+}
src/fusion_sdk/calvin_files/array/src/ArrayMedia.h
History View file @ e9f9e80
... ... 
@@ -1,52 +1,52 @@
1 
-/////////////////////////////////////////////////////////////////
2 
-//
3 
-// Copyright (C) 2005 Affymetrix, Inc.
4 
-//
5 
-// This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
10 
-// This library is distributed in the hope that it will be useful, but
11 
-// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 
-// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 
-// for more details.
14 
-//
15 
-// You should have received a copy of the GNU Lesser General Public License
16 
-// along with this library; if not, write to the Free Software Foundation, Inc.,
17 
-// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 
-//
19 
-/////////////////////////////////////////////////////////////////
20 
-
21 
-#ifndef _ArrayMedia_HEADER_
22 
-#define _ArrayMedia_HEADER_
23 
-
24 
-/*! \file ArrayMedia.h This file a type for defining the media type of an array. */
25 
-
26 
-#include <string>
27 
-
28 
-namespace affymetrix_calvin_array
29 
-{
30 
-
31 
-/*! The type of media of the array. */
32 
-typedef enum _ArrayMedia
33 
-{
34 
-	CartridgeMedia,		/*! A GeneChip cartridge. */
35 
-	PlateOrStripMedia	/*! A 96 well plate or peg strip. */
36 
-} ArrayMedia;
37 
-
38 
-/*! Converts the media type to a string.
39 
- * @param media The media type
40 
- * @return The string representation.
41 
- */
42 
-std::wstring MediaToString(ArrayMedia media);
43 
-
44 
-/*! Converts a string to media type.
45 
- * @param media The string representation.
46 
- * @return The media
47 
- */
48 
-ArrayMedia MediaFromString(const std::wstring &media);
49 
-
50 
-};
51 
-
52 
-#endif // _ArrayMedia_HEADER_
1 
+////////////////////////////////////////////////////////////////
2 
+//
3 
+// Copyright (C) 2005 Affymetrix, Inc.
4 
+//
5 
+// This library is free software; you can redistribute it and/or modify
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
9 
+// This library is distributed in the hope that it will be useful, but
10 
+// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
11 
+// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
12 
+// for more details.
13 
+//
14 
+// You should have received a copy of the GNU Lesser General Public License
15 
+// along with this library; if not, write to the Free Software Foundation, Inc.,
16 
+// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
17 
+//
18 
+////////////////////////////////////////////////////////////////
19 
+
20 
+
21 
+#ifndef _ArrayMedia_HEADER_
22 
+#define _ArrayMedia_HEADER_
23 
+
24 
+/*! \file ArrayMedia.h This file a type for defining the media type of an array. */
25 
+
26 
+#include <string>
27 
+
28 
+namespace affymetrix_calvin_array
29 
+{
30 
+
31 
+/*! The type of media of the array. */
32 
+typedef enum _ArrayMedia
33 
+{
34 
+	CartridgeMedia,		/*! A GeneChip cartridge. */
35 
+	PlateOrStripMedia	/*! A 96 well plate or peg strip. */
36 
+} ArrayMedia;
37 
+
38 
+/*! Converts the media type to a string.
39 
+ * @param media The media type
40 
+ * @return The string representation.
41 
+ */
42 
+std::wstring MediaToString(ArrayMedia media);
43 
+
44 
+/*! Converts a string to media type.
45 
+ * @param media The string representation.
46 
+ * @return The media
47 
+ */
48 
+ArrayMedia MediaFromString(const std::wstring &media);
49 
+
50 
+};
51 
+
52 
+#endif // _ArrayMedia_HEADER_
src/fusion_sdk/calvin_files/array/src/CreateStep.cpp
History View file @ e9f9e80
... ... 
@@ -1,136 +1,136 @@
1 
-/////////////////////////////////////////////////////////////////
2 
-//
3 
-// Copyright (C) 2005 Affymetrix, Inc.
4 
-//
5 
-// This library is free software; you can redistribute it and/or modify
6 
-// it under the terms of the GNU Lesser General Public License as published
7 
-// by the Free Software Foundation; either version 2.1 of the License,
8 
-// or (at your option) any later version.
9 
-//
10 
-// This library is distributed in the hope that it will be useful, but
11 
-// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
12 
-// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
13 
-// for more details.
14 
-//
15 
-// You should have received a copy of the GNU Lesser General Public License
16 
-// along with this library; if not, write to the Free Software Foundation, Inc.,
17 
-// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
18 
-//
19 
-/////////////////////////////////////////////////////////////////
20 
-
21 
-#include "CreateStep.h"
22 
-
23 
-using namespace affymetrix_calvin_array;
24 
-
25 
-/*! The none step. */
26 
-#define CREATED_STEP_NONE std::wstring(L"None")
27 
-
28 
-/*! The array registration step. */
29 
-#define CREATED_STEP_ARRAY_REG std::wstring(L"ArrayRegistration")
30 
-
31 
-/*! The scan step. */
32 
-#define CREATED_STEP_SCAN std::wstring(L"Scanning")
33 
-
34 
-/*! The grid alignment step. */
35 
-#define CREATED_STEP_GRID std::wstring(L"Gridding")
36 
-
37 
-/*! The cel analysis step. */
38 
-#define CREATED_STEP_CEL std::wstring(L"CELAnalysis")
39 
-
40 
-/*! Other undefined step. */
41 
-#define CREATED_STEP_OTHER std::wstring(L"Other")
42 
-
43 
-/*! From step. */
44 
-#define CREATED_STEP_FROM std::wstring(L"From")
45 
-
46 
-/*! Job order step. */
47 
-#define CREATED_STEP_JOB_ORDER std::wstring(L"JobOrderServer")
48 
-
49 
-/*! File indexer step. */
50 
-#define CREATED_STEP_FILE_INDEXER std::wstring(L"FileIndexer")
51 
-
52 
-/*
53 
- * Convert the step type to a string.
54 
- */
55 
-std::wstring affymetrix_calvin_array::CreateStepToString(CreateStep step)
56 
-{
57 
-	switch (step)
58 
-	{
59 
-	case NoStep:
60 
-		return CREATED_STEP_NONE;
61 
-		break;
62 
-
63 
-	case ArrayRegistrationStep:
64 
-		return CREATED_STEP_ARRAY_REG;
65 
-		break;
66 
-
67 
-	case ScanningStep:
68 
-		return CREATED_STEP_SCAN;
69 
-		break;
70 
-
71 
-	case GriddingStep:
72 
-		return CREATED_STEP_GRID;
73 
-		break;
74 
-
75 
-	case CELAnalysisStep:
76 
-		return CREATED_STEP_CEL;
77 
-		break;
78 
-
79 
-	case OtherStep:
80 
-		return CREATED_STEP_OTHER;
81 
-		break;
82 
-
83 
-	case FromStep:
84 
-		return CREATED_STEP_FROM;
85 
-		break;
86 
-
87 
-	case JobOrderServerStep:
88 
-		return CREATED_STEP_JOB_ORDER;
89 
-		break;
90 
-
91 
-	case FileIndexerStep:
92 
-		return CREATED_STEP_FILE_INDEXER;
93 
-		break;
94 
-
95 
-	default:
96 
-		return L"";
97 
-		break;
98 
-	}
99 
-}
100 
-
101 
-/*
102 
- * Convert a string to step type.
103 
- */
104 
-CreateStep affymetrix_calvin_array::CreateStepFromString(const std::wstring &step)
105 
-{
106 
-	if (step == CREATED_STEP_NONE)
107 
-		return NoStep;
108 
-
109 
-	else if (step == CREATED_STEP_ARRAY_REG)
110 
-		return ArrayRegistrationStep;
111 
-
112 
-	else if (step == CREATED_STEP_SCAN)
113 
-		return ScanningStep;
114 
-
115 
-	else if (step == CREATED_STEP_GRID)
116 
-		return GriddingStep;
117 
-
118 
-	else if (step == CREATED_STEP_CEL)
119 
-		return CELAnalysisStep;
120 
-
121 
-	else if (step == CREATED_STEP_OTHER)
122 
-		return OtherStep;
123 
-
124 
-	else if (step == CREATED_STEP_FROM)
125 
-		return FromStep;
126 
-
127 
-	else if (step == CREATED_STEP_JOB_ORDER)
128 
-		return JobOrderServerStep;
129 
-
130 
-	else if (step == CREATED_STEP_FILE_INDEXER)
131 
-		return FileIndexerStep;
132 
-
133 
-	else
134 
-		return OtherStep;
135 
-}
136 
-
1 
+////////////////////////////////////////////////////////////////
2 
+//
3 
+// Copyright (C) 2005 Affymetrix, Inc.
4 
+//
5 
+// This library is free software; you can redistribute it and/or modify
6 
+// it under the terms of the GNU Lesser General Public License
7 
+// (version 2.1) as published by the Free Software Foundation.
8 
+//
9 
+// This library is distributed in the hope that it will be useful, but
10 
+// WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
11 
+// or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License
12 
+// for more details.
13 
+//