# Generated by roxygen2: do not edit by hand

export(a4palette)
export(addQuantilesColors)
export(boxPlot)
export(combineTwoExpressionSet)
export(computeLogRatio)
export(createExpressionSet)
export(filterVarInt)
export(heatmap.expressionSet)
export(histPvalue)
export(histpvalueplotter)
export(lassoReg)
export(limmaTwoLevels)
export(logReg)
export(plot1gene)
export(plotComb2Samples)
export(plotCombMultSamples)
export(plotCombination2genes)
export(plotLogRatio)
export(probabilitiesPlot)
export(probe2gene)
export(profilesPlot)
export(propdegenescalculation)
export(replicates)
export(tTest)
export(volcanoplotter)
exportClasses(ExpressionSetWithComputation)
exportMethods(histPvalue)
exportMethods(propDEgenes)
exportMethods(spectralMap)
exportMethods(topTable)
exportMethods(volcanoPlot)
importFrom(Biobase,AnnotatedDataFrame)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,MIAME)
importFrom(Biobase,`assayData<-`)
importFrom(Biobase,`fData<-`)
importFrom(Biobase,`pData<-`)
importFrom(Biobase,`phenoData<-`)
importFrom(Biobase,annotation)
importFrom(Biobase,assayData)
importFrom(Biobase,experimentData)
importFrom(Biobase,exprs)
importFrom(Biobase,fData)
importFrom(Biobase,featureData)
importFrom(Biobase,featureNames)
importFrom(Biobase,openPDF)
importFrom(Biobase,pData)
importFrom(Biobase,package.version)
importFrom(Biobase,phenoData)
importFrom(Biobase,sampleNames)
importFrom(Biobase,varMetadata)
importFrom(a4Core,topTable)
importFrom(a4Preproc,addGeneInfo)
importFrom(annaffy,aafSymbol)
importFrom(annaffy,getText)
importFrom(genefilter,filterfun)
importFrom(genefilter,genefilter)
importFrom(genefilter,pOverA)
importFrom(genefilter,rowFtests)
importFrom(genefilter,rowttests)
importFrom(glmnet,glmnet)
importFrom(gplots,colorpanel)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colors)
importFrom(grDevices,densCols)
importFrom(grDevices,dev.off)
importFrom(grDevices,hcl)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(grDevices,x11)
importFrom(graphics,abline)
importFrom(graphics,axis)
importFrom(graphics,barplot)
importFrom(graphics,box)
importFrom(graphics,boxplot)
importFrom(graphics,hist)
importFrom(graphics,layout)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,matplot)
importFrom(graphics,mtext)
importFrom(graphics,pairs)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,rect)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(graphics,title)
importFrom(grid,convertHeight)
importFrom(grid,convertUnit)
importFrom(grid,current.viewport)
importFrom(grid,dataViewport)
importFrom(grid,editGrob)
importFrom(grid,gEdit)
importFrom(grid,gEditList)
importFrom(grid,gList)
importFrom(grid,gPath)
importFrom(grid,gTree)
importFrom(grid,gpar)
importFrom(grid,grid.draw)
importFrom(grid,grid.layout)
importFrom(grid,grid.lines)
importFrom(grid,grid.newpage)
importFrom(grid,grid.points)
importFrom(grid,grid.pretty)
importFrom(grid,grid.rect)
importFrom(grid,grid.segments)
importFrom(grid,grid.text)
importFrom(grid,grid.xaxis)
importFrom(grid,grid.yaxis)
importFrom(grid,grobWidth)
importFrom(grid,plotViewport)
importFrom(grid,popViewport)
importFrom(grid,pushViewport)
importFrom(grid,rectGrob)
importFrom(grid,textGrob)
importFrom(grid,unit)
importFrom(grid,unit.c)
importFrom(grid,viewport)
importFrom(grid,xaxisGrob)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTableF)
importFrom(methods,new)
importFrom(mpm,mpm)
importFrom(mpm,plot.mpm)
importFrom(multtest,mt.rawp2adjp)
importFrom(stats,IQR)
importFrom(stats,aggregate)
importFrom(stats,as.dendrogram)
importFrom(stats,cor)
importFrom(stats,cor.test)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,fitted)
importFrom(stats,glm)
importFrom(stats,hclust)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,order.dendrogram)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stats,symnum)
importFrom(stats,t.test)
importFrom(utils,browseURL)
importFrom(utils,head)
importFrom(utils,packageDescription)