Bioconductor Code: Voyager

Graph of Voyager

b67f40d (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:44:36 -0400;
27aa232 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:44:36 -0400;
3bff99e (origin/RELEASE_3_17, RELEASE_3_17) Fix problem from tidyverse/ggplot2#5333, boundaries showing despite linewidth = 0 on Windows. Closing #13. Version bumped to make this change visible to Bioconductor users. I thought I was done with bugs for now when I version bumped earlier today, but I was wrong. by Lambda Moses <dlu2@caltech.edu> 2023-09-19 20:35:09 -0700;
882e57e Merged from main by Lambda Moses <dlu2@caltech.edu> 2023-09-19 18:45:24 -0700;
773d7a4 Updated news and version bump for the bug fixes by Lambda Moses <dlu2@caltech.edu> 2023-09-19 18:43:12 -0700;
d016994 Remove adespatial from Suggests, as it got kicked out of CRAN by Lambda Moses <dlu2@caltech.edu> 2023-09-19 18:14:52 -0700;
7b0d315 Merge from main by Lambda Moses <dlu2@caltech.edu> 2023-09-18 21:53:10 -0700;
13562e1 Allow 16 bit images, address <a href="#11">#11</a> by Lambda Moses <dlu2@caltech.edu> 2023-09-18 21:50:14 -0700;
fd6ad8f plotColGraph for one of two samples, addressing <a href="#12">#12</a> by Lambda Moses <dlu2@caltech.edu> 2023-09-18 20:13:32 -0700;
7f70163 Quick fix for mysterious doc-devel site build error by Lambda Moses <dlu2@caltech.edu> 2023-09-06 14:56:51 -0700;
8905a8c Add concept to documentation, to create sections in reference page on documentation website by Lambda Moses <dlu2@caltech.edu> 2023-08-23 22:18:53 -0700;
8d28db6 Always use imgRaster getter, for SFE 1.2.3 by Lambda Moses <dlu2@caltech.edu> 2023-08-18 19:08:09 -0700;
c1e1b05 Added citation by Lambda Moses <dlu2@caltech.edu> 2023-07-29 21:22:05 -0700;
2a6b247 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-07-17 17:10:06 -0700;
025d996 Import matrixStats instead of sparseMatrixStats by Lambda Moses <dlu2@caltech.edu> 2023-07-17 17:09:46 -0700;
bf59b56 Merge from main by Lambda Moses <dlu2@caltech.edu> 2023-07-13 18:40:21 -0700;
09578e3 Warnings in unit tests by Lambda Moses <dlu2@caltech.edu> 2023-07-13 18:36:31 -0700;
c403e12 Already deprecaged by Lambda Moses <dlu2@caltech.edu> 2023-07-06 18:34:20 -0700;
235de2a Don't use release version by Lambda Moses <dlu2@caltech.edu> 2023-07-06 11:23:08 -0700;
97ec851 Merge from main by Lambda Moses <dlu2@caltech.edu> 2023-07-06 11:22:32 -0700;
ab26222 Version bump and NEWS by Lambda Moses <dlu2@caltech.edu> 2023-07-05 00:31:38 -0700;
90253bb Added bin_contours argument to moranPlot by Lambda Moses <dlu2@caltech.edu> 2023-07-04 23:44:36 -0700;
6e53cba Use algebraic eigenvalues, and get rid of useNames = NA warning by Lambda Moses <dlu2@caltech.edu> 2023-07-04 16:48:31 -0700;
3b7224e Change LR to LM by Lambda Moses <dlu2@caltech.edu> 2023-07-04 16:38:21 -0700;
741f5f9 Also explicitly download image in the main branch vignette, address <a href="#4">#4</a> by Lambda Moses <dlu2@caltech.edu> 2023-05-15 18:54:23 -0700;
b0afd24 Merge branch 'RELEASE_3_17' by Lambda Moses <dlu2@caltech.edu> 2023-05-15 17:57:41 -0700;
182ee2a Don't use devel version number by Lambda Moses <dlu2@caltech.edu> 2023-05-15 17:55:22 -0700;
777c6d9 Merge branch 'main' of github.com:pachterlab/voyager by Lambda Moses <dlu2@caltech.edu> 2023-05-15 17:54:37 -0700;
4e55d0d Undo push after I accidentally merged devel into main by Lambda Moses <dlu2@caltech.edu> 2023-05-15 17:54:24 -0700;
4f983ba Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-05-15 17:27:48 -0700;
90d0669 Removed deprecated contents by Lambda Moses <dlu2@caltech.edu> 2023-05-15 17:26:20 -0700;
96489d9 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-05-15 16:20:55 -0700;
b03f487 Allow illegal symbols. Address <a href="#6">#6</a> by Lambda Moses <dlu2@caltech.edu> 2023-05-15 16:19:12 -0700;
e25778a Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-05-06 16:08:34 -0700;
57861c0 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-05-06 16:07:14 -0700;
36e3381 Remove unused function by Lambda Moses <dlu2@caltech.edu> 2023-05-06 16:06:50 -0700;
46a47e4 Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-05-04 00:19:36 -0700;
872f500 merge from main by Lambda Moses <dlu2@caltech.edu> 2023-05-04 00:18:30 -0700;
1759b93 Update NEWS by Lambda Moses <dlu2@caltech.edu> 2023-05-04 00:17:40 -0700;
f93befa Update documentation by Lambda Moses <dlu2@caltech.edu> 2023-05-04 00:16:04 -0700;
3e8775a Change secondary sequential palette to YlOrRd by Lambda Moses <dlu2@caltech.edu> 2023-05-04 00:14:27 -0700;
fcadf98 Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-04-26 20:21:13 -0700;
d56d133 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-04-26 20:20:59 -0700;
a95aecb Always give gene symbols in bivariate results when swap_rownames is set by Lambda Moses <dlu2@caltech.edu> 2023-04-26 20:20:41 -0700;
4ed7c32 Forgot to add overwrite to news by Lambda Moses <dlu2@caltech.edu> 2023-04-26 16:15:57 -0700;
37fcdcc Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-04-26 05:57:18 -0700;
06fd9c4 Merge from main by Lambda Moses <dlu2@caltech.edu> 2023-04-26 05:56:54 -0700;
e39d3a3 Embarrasing date mistake, and update NEWS so I don't forget by Lambda Moses <dlu2@caltech.edu> 2023-04-26 05:56:07 -0700;
8ac84ba Just found another bug: plot a legal and an illegal name in different panels by Lambda Moses <dlu2@caltech.edu> 2023-04-26 05:54:39 -0700;
af9c128 Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-04-26 05:27:01 -0700;
9667dd5 Version bump. So soon. Should have held off until the end of day. by Lambda Moses <dlu2@caltech.edu> 2023-04-26 05:26:45 -0700;
2546455 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-04-26 05:25:37 -0700;
418045e Updated NEWS by Lambda Moses <dlu2@caltech.edu> 2023-04-26 05:25:14 -0700;
eabcb0d Only plot one component in spatialReducedDim, and deal with illegal names outside gene symbols by Lambda Moses <dlu2@caltech.edu> 2023-04-26 05:19:39 -0700;
e4b6a43 Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:57:43 -0700;
a8817d3 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:57:15 -0700;
00cbc81 is.na by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:57:01 -0700;
b2f36e7 Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:55:26 -0700;
8c44adc Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:48:38 -0700;
18104d6 When default attr is NA by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:48:19 -0700;
c907851 Version number for devel by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:33:26 -0700;
b0514ef Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:32:33 -0700;
3913fa5 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:32:07 -0700;
da872e8 Overwrite and make features appear in the order they were specified in the plots by Lambda Moses <dlu2@caltech.edu> 2023-04-25 22:31:53 -0700;
6f48549 Merge branch 'main' of github.com:pachterlab/voyager by Lambda Moses <dlu2@caltech.edu> 2023-04-25 21:05:28 -0700;
cb48b18 Merge branch 'main' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-04-25 21:00:02 -0700;
ddedc50 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-04-25 20:59:50 -0700;
a67f1c7 First bug for Bioc 3.17: runBivariate gets the correct feature names when only feature1 is specified and using swap_rownames by Lambda Moses <dlu2@caltech.edu> 2023-04-25 20:59:03 -0700;
344623b Merge branch 'devel' into RELEASE_3_17 by Lambda Moses <dlu2@caltech.edu> 2023-04-25 18:49:23 -0700;
356563e Don't let localG results take up so much space by Lambda Moses <dlu2@caltech.edu> 2023-04-25 18:49:10 -0700;
8072b66 Didn't work by Lambda Moses <dlu2@caltech.edu> 2023-04-25 17:34:05 -0700;
723ff84 Update pkgdown.yaml by Lambda Moses <dlu2@caltech.edu> 2023-04-25 17:07:53 -0700;
90f0e21 Temporarily by Lambda Moses <dlu2@caltech.edu> 2023-04-25 16:46:47 -0700;
2289c3c Merge branch 'main' of github.com:pachterlab/voyager by Lambda Moses <dlu2@caltech.edu> 2023-04-25 12:59:51 -0700;
951d0d3 Merge branch 'RELEASE_3_17' by Lambda Moses <dlu2@caltech.edu> 2023-04-25 12:59:26 -0700;
44a076c Will it make it? by Lambda Moses <dlu2@caltech.edu> 2023-04-25 12:58:46 -0700;
6570e62 Merge branch 'devel' of git.bioconductor.org:packages/Voyager into devel by Lambda Moses <dlu2@caltech.edu> 2023-04-25 12:56:24 -0700;
92aab08 Deprecate plotColDataBin2D by Lambda Moses <dlu2@caltech.edu> 2023-04-25 12:55:46 -0700;
b9a694a Update pkgdown-devel.yaml by Lambda Moses <dlu2@caltech.edu> 2023-04-25 12:26:00 -0700;
6f88016 Artificially get another build without having bot triggering it by Lambda Moses <dlu2@caltech.edu> 2023-04-25 12:02:45 -0700;
bbf2a74 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:40:41 -0400;
86f5108 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:40:41 -0400;
880e0f3 Updated DESCRIPTION and README by Lambda Moses <dlu2@caltech.edu> 2023-04-25 01:27:52 -0700;
fc5646a Forgot to update snapshot after changing from Semivariogram to Variogram by Lambda Moses <dlu2@caltech.edu> 2023-04-25 01:24:06 -0700;
532bfb1 Make pkgdown-devel run earlier so I can see if there're errors in the morning. Also no longer need GitHub version of scater. by Lambda Moses <dlu2@caltech.edu> 2023-04-25 01:13:56 -0700;
03edcb6 Fix Licence NA on website by Lambda Moses <dlu2@caltech.edu> 2023-04-25 01:06:49 -0700;
1a10ea6 Say Variance instead of Semivariance, because the data is scaled and I do think the y axis is variance by Lambda Moses <dlu2@caltech.edu> 2023-04-25 00:52:58 -0700;
da429a3 Fix bug when running cross variogram map for one pair of genes by Lambda Moses <dlu2@caltech.edu> 2023-04-25 00:41:22 -0700;
7cb8ef1 suggest sfarrow by Lambda Moses <dlu2@caltech.edu> 2023-04-24 14:04:39 -0700;
1905928 Suggest vroom for readVizgen example by Lambda Moses <dlu2@caltech.edu> 2023-04-24 12:31:25 -0700;
b2bd3b5 mode = "wb" for windows by Lambda Moses <dlu2@caltech.edu> 2023-04-24 11:38:30 -0700;
d979c99 Forgot to pass name to calculateUnivariate by Lambda Moses <dlu2@caltech.edu> 2023-04-24 02:03:55 -0700;
e3dc631 Put a gap between positive and negative eigenvalues by Lambda Moses <dlu2@caltech.edu> 2023-04-22 09:18:27 -0700;
4919ed8 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-04-22 07:06:18 -0700;
2cfacf3 Merge branch 'main' into devel by Lambda Moses <dlu2@caltech.edu> 2023-04-22 07:04:16 -0700;
5c07f74 Forgot something in news by Lambda Moses <dlu2@caltech.edu> 2023-04-22 07:04:12 -0700;
169837f Plot images behind geometries by Lambda Moses <dlu2@caltech.edu> 2023-04-22 03:04:47 -0700;
b2095b2 Unit tests for the other error messages by Lambda Moses <dlu2@caltech.edu> 2023-04-11 16:16:22 -0700;
f11bd70 Make plotLocalResult take non-standard names by Lambda Moses <dlu2@caltech.edu> 2023-04-11 01:18:24 -0700;
5f00f01 listSFEMethods by Lambda Moses <dlu2@caltech.edu> 2023-04-11 01:18:07 -0700;