Name Mode Size
..
VariantExperiment-class.Rd 100644 2 kb
VariantExperiment-package.Rd 100644 1 kb
loadVariantExperiment.Rd 100644 1 kb
makeVariantExperimentFromGDS.Rd 100644 3 kb
makeVariantExperimentFromVCF.Rd 100644 4 kb
saveVariantExperiment.Rd 100644 2 kb
showAvailable.Rd 100644 1 kb
README.md
# VariantExperiment VariantExperiment is a Bioconductor package for saving data in VCF/GDS format into RangedSummarizedExperiment object. The high-throughput genetic/genomic data are saved in GDSArray objects. The annotation data for features/samples are saved in DelayedDataFrame format with mono-dimensional GDSArray in each column. The on-disk representation of both assay data and annotation data achieves on-disk reading and processing and saves memory space significantly. The interface of RangedSummarizedExperiment data format enables easy and common manipulations for high-throughput genetic/genomic data with common SummarizedExperiment metaphor in R and Bioconductor.