Package: VariantExperiment
Title: A RangedSummarizedExperiment Container for VCF/GDS Data with
    GDS Backend
Version: 1.17.0
Authors@R: c(
    person(
        "Qian", "Liu", email = "Qian.Liu@roswellpark.org", role=c("aut", "cre")
    ),
    person("Hervé",  "Pagès", role = "aut"),
    person("Martin", "Morgan", role = "aut"))
Description: VariantExperiment is a Bioconductor package for saving
    data in VCF/GDS format into RangedSummarizedExperiment object. The
    high-throughput genetic/genomic data are saved in GDSArray
    objects. The annotation data for features/samples are saved in
    DelayedDataFrame format with mono-dimensional GDSArray in each
    column. The on-disk representation of both assay data and
    annotation data achieves on-disk reading and processing and saves
    memory space significantly. The interface of
    RangedSummarizedExperiment data format enables easy and common
    manipulations for high-throughput genetic/genomic data with common
    SummarizedExperiment metaphor in R and Bioconductor.
biocViews: Infrastructure, DataRepresentation, Sequencing, Annotation,
    GenomeAnnotation, GenotypingArray
Depends:
    R (>= 3.6.0),
    S4Vectors (>= 0.21.24),
    SummarizedExperiment (>= 1.13.0),
    GenomicRanges,
License: GPL-3
Encoding: UTF-8
URL: https://github.com/Bioconductor/VariantExperiment
BugReports: https://github.com/Bioconductor/VariantExperiment/issues
Imports: 
    GDSArray (>= 1.11.1),
    DelayedDataFrame (>= 1.6.0),
    tools,
    utils,
    stats,
    methods,
    gdsfmt, 
    SNPRelate,
    SeqArray,
    DelayedArray,
    Biostrings, 
    IRanges
RoxygenNote: 7.2.3
Suggests: testthat, knitr, rmarkdown, markdown, BiocStyle
VignetteBuilder: knitr