Package: VaSP
Type: Package
Version: 1.15.0
Title: Quantification and Visualization of Variations of Splicing in Population
Authors@R: c(person("Huihui", "Yu", role = c("aut", "cre"), 
    email = "", comment = c(ORCID = "0000-0003-2725-1937")),
    person("Qian", "Du", role="aut",email = "",
    comment = c(ORCID = '0000-0003-3864-8745')),
    person("Chi", "Zhang", role="aut", email="", 
    comment = c(ORCID = '0000-0002-1827-8137')))
Description: Discovery of genome-wide variable alternative splicing events from 
    short-read RNA-seq data and visualizations of gene splicing information for 
    publication-quality multi-panel figures in a population. (Warning: The 
    visualizing function is removed due to the dependent package Sushi 
    deprecated. If you want to use it, please change back to an older version.) 
License: GPL (>= 2.0)
Depends: R (>= 4.0), ballgown
Imports: IRanges, GenomicRanges, S4Vectors, parallel, matrixStats, 
    GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: RNASeq, AlternativeSplicing, DifferentialSplicing, StatisticalMethod,
    Visualization, Preprocessing, Clustering, DifferentialExpression, KEGG, 
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.1.1