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  • e5622ac (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:51:41 -0400;
  • 2a55784 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:51:41 -0400;
  • ad91c49 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:24:30 -0400;
  • eaf29b3 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:24:30 -0400;
  • af5a470 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:31 -0400;
  • a2ee720 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:31 -0400;
  • f90b76f TransView-Rhtslib-1.99.1-compat.patch by jumueller1 <julius.mueller@medgen-mainz.de> 2022-05-04 00:09:10 +0200;
  • d21bad1 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:12:30 +0000;
  • 1fc933d (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:12:30 +0000;
  • 75274a3 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:05:10 +0000;
  • 4828b3b (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:05:10 +0000;
  • 6719a40 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:54:27 +0000;
  • f763b52 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:54:27 +0000;
  • 0b173d5 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:47:46 -0400;
  • 8a97404 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:47:46 -0400;
  • de24867 Call Rscript instead of R in Makevars by Hervé Pagès <hpages@fredhutch.org> 2020-07-14 13:43:55 -0700;
  • 64d5c48 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:31:45 +0000;
  • 1d616da (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:31:44 +0000;
  • 2e7eb2e bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:24 -0400;
  • 8f39927 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:35 -0400;
  • 6d3b73c Adjust Makevars to work with latest Rhtslib by Hervé Pagès <hpages@fredhutch.org> 2019-10-12 13:59:34 -0700;
  • d0571cf bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:15 -0400;
  • 2b0ea1a (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:39 -0400;
  • 9de15ed Compile and link C code against Rhtslib instead of Rsamtools by Hervé Pagès <hpages@fredhutch.org> 2019-02-12 07:27:31 -0800;
  • 4393040 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:52:57 -0500;
  • de60626 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:52:53 -0500;
  • 840bdd3 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:30 -0400;
  • 12e9eaf bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:49 -0400;
  • 8dafecb Clean up use of biocLite & add BiocManager to Suggests field by Hervé Pagès <hpages@fredhutch.org> 2018-09-06 14:12:49 -0700;
  • b957e9c replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:57:52 -0400;
  • 260da9c bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:39 -0400;
  • 3f81a94 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:27 -0400;
  • a54d54a bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:34 -0400;
  • 535ca36 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:53 -0400;
  • e0530a4 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • c2642f2 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 27289f7 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • bf318c4 (origin/RELEASE_3_4, RELEASE_3_4) Processed vignettes (PDF or HTML) don't belong to the package source tree and are actually harmful. by Herve Pages <hpages@fhcrc.org> 2016-10-27 18:48:09 +0000;
  • 78739a1 Processed vignettes (PDF or HTML) don't belong to the package source tree and are actually harmful. by Herve Pages <hpages@fhcrc.org> 2016-10-27 18:45:14 +0000;
  • b855a28 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • f28c796 Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 1ba84e9 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • f0e8080 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 432185e (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • a9d0719 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • d188172 elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon) by Herve Pages <hpages@fhcrc.org> 2016-01-29 01:22:03 +0000;
  • 72e9136 Update DESCRIPTION by Julius Muller <ju-mu@alumni.ethz.ch> 2016-01-18 02:01:53 +0000;
  • b9fb1ab Update NAMESPACE by Julius Muller <ju-mu@alumni.ethz.ch> 2016-01-18 02:01:46 +0000;
  • 86a647b Update NEWS by Julius Muller <ju-mu@alumni.ethz.ch> 2016-01-18 02:01:35 +0000;
  • 3cba6f3 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 1459806 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 0f3aa58 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • a251a8e Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 2990aea (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • b6363c8 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 4cacd2e add r_arch consideration for Linux by Nathaniel Hayden <nhayden@fhcrc.org> 2015-03-20 18:43:01 +0000;
  • 828db02 update to require proper version of Rsamtools by Nathaniel Hayden <nhayden@fhcrc.org> 2015-02-27 20:06:26 +0000;
  • 15ad3b9 update to reflect new Rsamtools recommendations by Nathaniel Hayden <nhayden@fhcrc.org> 2015-02-27 01:59:23 +0000;
  • 6dcfdc4 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • ed35f83 (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • 64ac651 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 083e1ca Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 3bb2d9b (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 3cbde13 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • ee781ad modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • 64abdc5 CHANGES IN VERSION 1.7.4 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2014-01-11 13:09:01 +0000;
  • a1398f1 CHANGES IN VERSION 1.7.3 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-12-18 01:19:07 +0000;
  • 1008912 CHANGES IN VERSION 1.7.2 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-12-17 23:33:05 +0000;
  • d9b1fb7 (origin/RELEASE_2_13, RELEASE_2_13) CHANGES IN VERSION 1.6.1 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-10-27 22:36:57 +0000;
  • b2bdb2a CHANGES IN VERSION 1.7.1 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-10-27 22:36:24 +0000;
  • 0936305 CHANGES IN VERSION 1.7.1 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-10-23 07:53:31 +0000;
  • 3f1d192 CHANGES IN VERSION 1.6.1 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-10-23 07:52:59 +0000;
  • 0d5115c bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 1ba6669 Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • 0a6a924 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • ff89e30 CHANGES IN VERSION 1.5.9 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-09-25 20:59:32 +0000;
  • 33aaaba CHANGES IN VERSION 1.5.8 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-08-19 11:26:16 +0000;
  • 0a17f7c CHANGES IN VERSION 1.5.7 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-08-07 13:27:12 +0000;
  • ab8147d (origin/RELEASE_2_12, RELEASE_2_12) CHANGES IN VERSION 1.4.5 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-08-07 11:03:44 +0000;
  • ec6c681 CHANGES IN VERSION 1.4.5 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-08-06 14:29:22 +0000;
  • a66bcf7 CHANGES IN VERSION 1.5.6 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-08-06 14:28:58 +0000;
  • 3c56d0f CHANGES IN VERSION 1.5.5 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-08-06 13:43:40 +0000;
  • 713c7da CHANGES IN VERSION 1.4.4 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-08-06 13:43:10 +0000;
  • eac77b5 CHANGES IN VERSION 1.4.3 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-07-22 16:46:50 +0000;
  • daf39dc CHANGES IN VERSION 1.5.4 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-07-22 16:46:14 +0000;
  • ef697ea CHANGES IN VERSION 1.5.3 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-05-20 17:36:52 +0000;
  • 84b2375 CHANGES IN VERSION 1.5.2 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-04-23 07:55:33 +0000;
  • b9f2e08 CHANGES IN VERSION 1.4.2 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-04-23 07:54:55 +0000;
  • 310b2bc CHANGES IN VERSION 1.4.1 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-04-07 20:41:07 +0000;
  • 2428bcb CHANGES IN VERSION 1.5.1 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-04-07 20:40:34 +0000;
  • c3a2315 Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • e148956 Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • e093056 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • 8610164 CHANGES IN VERSION 1.2.11 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-03-25 02:21:51 +0000;
  • ef1ffdb update to reflect changes in samtools / Rsamtools by Martin Morgan <mtmorgan@fhcrc.org> 2013-03-24 21:11:12 +0000;
  • ab1dc7c CHANGES IN VERSION 1.2.9 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-03-22 16:07:04 +0000;
  • 5cc6b2d CHANGES IN VERSION 1.2.8 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-03-22 15:05:56 +0000;
  • 20ad9d1 CHANGES IN VERSION 1.2.7 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-03-21 15:42:55 +0000;
  • dd9a3bd CHANGES IN VERSION 1.2.6 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-03-15 14:24:39 +0000;
  • 3338395 CHANGES IN VERSION 1.2.5 ------------------------ by Julius Muller <ju-mu@alumni.ethz.ch> 2013-03-13 19:06:50 +0000;