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README.md
# TnT [![Bioc](http://www.bioconductor.org/shields/years-in-bioc/TnT.svg)](https://www.bioconductor.org/packages/devel/bioc/html/TnT.html#since) [![Travis-CI Build Status](https://travis-ci.org/Marlin-Na/TnT.svg?branch=master)](https://travis-ci.org/Marlin-Na/TnT) [![Bioconductor Release](https://www.bioconductor.org/shields/build/release/bioc/TnT.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/TnT/) [![Bioconductor Devel](https://www.bioconductor.org/shields/build/devel/bioc/TnT.svg)](http://bioconductor.org/checkResults/devel/bioc-LATEST/TnT/) TnT is a R package that wraps the [TnT javascript libraries](https://github.com/tntvis) to provide track-based visulizations from R. It is useful for displaying genomic features as a simple genome browser, particularly when working with relevant Bioconductor packages. To install the stable version from biocondcutor, use ```R if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("TnT") ``` Or alternatively, install the latest version from github with ```R devtools::install_github("Marlin-Na/TnT") ``` To get started, checkout: - The package vignette [Introduction to TnT](https://tnt.marlin.pub/articles/introduction.html) - [Examples](https://tnt.marlin.pub/articles/examples) of different track types. You can also find the [package](http://bioconductor.org/packages/release/bioc/html/TnT.html) on Bioconductor. ### GSoC 2017 This R package was a Google Summer of Code project in 2017, kindly mentored by Toby Dylan Hocking and Miguel Pignatelli, under the organization of R project for statistical computing. Please see: - [The project link](https://summerofcode.withgoogle.com/dashboard/project/5521605556961280/overview/) - [Wiki](https://github.com/rstats-gsoc/gsoc2017/wiki/Interactive-Genome-Browser-in-R) of the project idea - [My blog post](http://weblog.marlin.pub/post/tnt/tnt-gsoc17/) as a summary of the project.