June 20, 2020
View58a718f

bug fix: moderated F-statistic uses now also moderated degrees of freedom df2

Nils Kurzawa authored on 20/06/2020 15:06:20
April 9, 2020
Viewe06805a

added option to squeezeVariance also for getPvalues function

Nils Kurzawa authored on 09/04/2020 13:48:44
View045c02d

added option to shrink F stat denominator using limma::squeezeVar

Nils Kurzawa authored on 09/04/2020 08:24:10
March 26, 2020
Viewdc37f1f

improved getFDR and findHits behavior in dealing with NA F statistics

Nils Kurzawa authored on 26/03/2020 11:17:24
March 19, 2020
View215eb9d

prevented NA F statistics from being considered for FDR estimation

Nils Kurzawa authored on 19/03/2020 15:29:04
January 29, 2020
View08e4232

replaced function for computing p-values

Nils Kurzawa authored on 29/01/2020 09:21:15
Viewced496d

added new function for computing p-values to replace kernel density-based one, added missing documentation for gg_qq plot parameter

Nils Kurzawa authored on 29/01/2020 09:03:26
January 24, 2020
Viewa8e30fd

changed example for kernel density based p-value estimate to adress example failure on windows

Nils Kurzawa authored on 24/01/2020 14:24:17
January 18, 2020
View7a03d6a

deprecated computeFdr and replaced it by getFDR

Nils Kurzawa authored on 18/01/2020 19:33:55
January 16, 2020
Viewb3b3c63

completed update to new bootstrap method based on alternative model residuals and adapted full workflow

Nils Kurzawa authored on 16/01/2020 16:11:08
October 29, 2019
Viewccd57a2

added alternative function for assessing FDR via kernel density derived p-values

Nils Kurzawa authored on 29/10/2019 16:15:10
September 25, 2019
View0116273

fixed bug in computeFdr function which could lead to negative fdrs

Nils Kurzawa authored on 25/09/2019 17:14:18
June 7, 2019
View1502076

changed default behavior of computeFdr() to use more stringent resampling within ms experiments and adapted depending code

Nils Kurzawa authored on 07/06/2019 11:22:32
April 15, 2019
View7903162

made examples runs faster to meet 10min check criterium

Nils Kurzawa authored on 15/04/2019 09:30:30
View02d6d7b

adressed review comments as well as possibe

Nils Kurzawa authored on 15/04/2019 08:31:14