1. TAPseq
  2. Graph
Graph of TAPseq
  • *
  • *
  • | *
  • | *
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • |\
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • |/
  • *
  • *
  • |\
  • | *
  • | *
  • | *
  • | *
  • |/
  • *
  • |\
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • |/
  • *
  • |\
  • | *
  • | *
  • |/
  • *
  • |\
  • | *
  • | *
  • | *
  • | *
  • |/
  • *
  • |\
  • * |
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • bc862df (origin/RELEASE_3_18, RELEASE_3_18) version bump in release by Andreas Gschwind <andreas.gschwind@stanford.edu> 2023-11-06 20:39:08 -0800;
  • 1006172 Bug fix: Update bone_marrow_genex.rda to be compatible with newer Seurat versions. by Andreas Gschwind <andreas.gschwind@stanford.edu> 2023-11-06 20:30:08 -0800;
  • 77db2dc (HEAD -> devel, origin/master, origin/devel, origin/HEAD) version bump in devel by Andreas Gschwind <andreas.gschwind@stanford.edu> 2023-11-06 20:31:20 -0800;
  • d0cd084 Bug fix: Update bone_marrow_genex.rda to be compatible with newer Seurat versions. by Andreas Gschwind <andreas.gschwind@stanford.edu> 2023-11-06 20:30:08 -0800;
  • 5226ac8 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:20:00 -0400;
  • 41a8fbd bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:20:00 -0400;
  • 5bf7e0b bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:16:00 -0400;
  • e3d9c6c (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:16:00 -0400;
  • 49fa54c bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:21:30 -0400;
  • 9a1ac4c (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:21:30 -0400;
  • 29e3a0d bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:03:10 +0000;
  • a9faecb (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:03:10 +0000;
  • a6002ee bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:57:48 +0000;
  • ea1cda0 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:57:48 +0000;
  • 782bd36 Implement BiocStyle styling for vignettes by Andreas Gschwind <andreas.gschwind@stanford.edu> 2021-10-18 21:43:44 +0200;
  • 9cd13cb Minor updates to documentation by Andreas Gschwind <andreas.gschwind@stanford.edu> 2021-10-17 20:11:36 -0700;
  • 747bd11 Fix bug in createPrimerTrack() by Andreas Gschwind <andreas.gschwind@stanford.edu> 2021-08-27 17:46:56 -0700;
  • fa24705 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:50:07 +0000;
  • cd5c228 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:50:07 +0000;
  • a1cdb3a Update serialized objects by Hervé Pagès <hpages.on.github@gmail.com> 2021-05-01 17:33:13 -0700;
  • 32ef1fd bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:54:09 -0400;
  • ab2957a (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:54:09 -0400;
  • 73bf27c Update README by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-08-10 15:39:51 -0700;
  • 64ade5c bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:34:33 +0000;
  • 8a16f63 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:34:33 +0000;
  • fc5bfa9 Fix bug in plotTargetGenes() by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-04-21 16:39:07 -0700;
  • 50a16a4 Update LICENSE file by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-03-17 19:46:02 +0100;
  • 22a6034 Improve show method for TsIO objects by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-03-17 00:09:09 +0100;
  • b48db18 Implement Bioconductor reviewer comments by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-03-16 18:17:27 +0100;
  • 945a66d Make bone marrow scRNA-seq example dataset smaller by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-03-11 22:13:11 +0100;
  • 85c321c Fix links to other functions in documentation by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-03-11 00:09:08 +0100;
  • b32092e Change package so that it can be built without Primer3 and BLAST+ by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-03-05 06:58:59 +0100;
  • fbe0aaf Finalize package for initial Bioconductor submission by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-02-21 23:30:33 +0100;
  • a03a2c1 Fix minor bug in primerDataFrame() by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-02-21 21:11:35 +0100;
  • 1401a2c Merge branch 'develop' by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-02-21 19:12:42 +0100;
  • 314d307 Address BiocCheck() issues by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-02-21 19:09:01 +0100;
  • a3afe11 Major changes to blast_primers.R by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-02-19 20:50:17 +0100;
  • 4abf947 Add primer export methods and functions by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-02-14 20:24:38 +0100;
  • c5e80db Major changes to TsIO object class by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-02-11 23:42:59 +0100;
  • 4e51e04 Add vignette for target gene selection by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-02-04 23:55:34 +0100;
  • 7307041 Address open issues (notes) from R CMD check by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-31 23:12:48 +0100;
  • a911384 Minor code and documentation changes by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-30 20:19:38 +0100;
  • 2012cab Improve tests by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-24 01:44:56 +0100;
  • fab590a Update README by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-24 00:28:39 +0100;
  • 1bd034b Merge branch 'develop' by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-15 23:21:28 +0100;
  • 16c4c7f Add cell type identification examples by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-15 21:34:07 +0100;
  • 4837edc Add code to identify cell population target genes by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-15 01:39:40 +0100;
  • e9abc98 Update README.md by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-15 01:26:29 +0100;
  • 9166acd Add TAPseqSeqTemplates() function to generate sequence templates by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-15 01:12:17 +0100;
  • 9dec5de Merge branch 'develop' by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-04 00:09:59 +0100;
  • e4223ff Add vignette and update version to 0.3.0 by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-04 00:04:47 +0100;
  • 07ae40c Improve createBlastDb function by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-02 23:43:02 +0100;
  • 57cfd4b Implement default usage of Primer3 >= 2.5.0 by Andreas Gschwind <andreas.gschwind@stanford.edu> 2020-01-02 23:06:55 +0100;
  • 1dadeac Add examples and unit tests for checkPrimers() by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-12-23 23:28:39 +0100;
  • f390861 Add unit tests for blastPrimers() by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-12-23 20:45:37 +0100;
  • ea45441 Rewrite code for off-target estimation using BLAST by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-12-19 02:29:52 +0100;
  • e72043b Add examples and unit tests for Primer3 IO functions by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-11-07 23:47:53 +0100;
  • 7e23145 Add examples and unit tests for TsIO objects and Primer3 boulder IO records by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-11-01 20:56:49 +0100;
  • 00eb1c2 Add unit tests for getTxsSeq() by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-31 04:15:43 +0100;
  • bf59bcd Major changes to example data by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-31 04:11:16 +0100;
  • 6f02ecd Rewrite truncateTxsPolyA() by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-15 01:56:51 +0200;
  • 89b7158 Fix bug in example sequence data by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-15 00:26:14 +0200;
  • c1a8ace Add tests for inferPolyASites() by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-14 22:25:24 +0200;
  • 2f27a14 Set up package for unit testing using testthat package by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-12 01:25:47 +0200;
  • bb2a62a Merge branch 'develop' by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-10 19:15:35 +0200;
  • 9ec7ed2 Fix bug in check_primers.R by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-10 19:12:03 +0200;
  • c985db9 Change example data by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-08 20:27:03 +0200;
  • c9740ea Merge branch 'develop' by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-04 20:17:15 +0200;
  • d71e7ce Fix critical bug in blast workflow by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-10-01 20:03:15 +0200;
  • fa9f087 Rename package to TAPseq by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-29 00:52:37 +0200;
  • 0d41af9 Fix package startup messages by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-28 20:18:02 +0200;
  • 14e7010 Add MIT license by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-27 02:07:42 +0200;
  • 1ba477a Merge branch 'master' of https://github.com/argschwind/TASCseq by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-23 20:20:56 +0200;
  • 9ac9e12 Update to version 0.1.0 by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-23 19:29:01 +0200;
  • ca1ae3f Add missing line break to README.md by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-17 16:40:09 -0700;
  • 42e3d95 Add R version dependency to DESCRIPTION by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-18 01:34:46 +0200;
  • f9f0c7c Add code to check primers for multiplex PCR compatibility by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-18 01:31:57 +0200;
  • 959cce3 Add code to estimate off-target priming using BLAST by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-17 04:39:19 +0200;
  • bc5e303 Add primer design core functionality by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-16 00:19:45 +0200;
  • 9d44e2f Remove FANCF gene from example data by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-15 21:31:22 +0200;
  • 44e349c Fix error in onLoad.R by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-15 21:28:59 +0200;
  • 0236b91 Add code to extract transcript sequences by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-13 22:21:18 +0200;
  • 222fb91 Add code to truncate transcripts at polyA sites by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-13 20:07:23 +0200;
  • 525a16f Add chromosome 11 polyA sites data by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-13 19:49:55 +0200;
  • 6e08549 Rename infer_polyA_sites() to inferPolyASites() by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-13 19:47:28 +0200;
  • 1075427 Add code for polyA site estimation to package by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-13 01:39:00 +0200;
  • 2c90804 Create README.md by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-12 15:25:39 -0700;
  • 84cc964 Add K562 Drop-seq example data (.bam file) by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-10 01:18:01 +0200;
  • a5554c4 Add gene annotation example data by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-10 00:05:29 +0200;
  • 7e1a166 Add package core components by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-09 23:42:29 +0200;
  • 2cf66ff Initial commit by Andreas Gschwind <andreas.gschwind@stanford.edu> 2019-08-09 19:07:08 +0200;