| ... | ... |
@@ -1,42 +1,42 @@ |
| 1 |
-Package: SynMut |
|
| 2 |
-Type: Package |
|
| 3 |
-Title: SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures |
|
| 4 |
-Version: 1.1.4 |
|
| 5 |
-Authors@R: c(person("Haogao", "Gu", email = "hggu@connect.hku.hk", role = c("aut", "cre")),
|
|
| 6 |
- person("Leo L.M.", "Poon", email = "llmpoon@hku.hk", role = "led"))
|
|
| 7 |
-Description: |
|
| 8 |
- There are increasing demands on designing virus mutants with specific dinucleotide or codon composition. |
|
| 9 |
- This tool can take both dinucleotide preference and/or codon usage bias into account while designing mutants. |
|
| 10 |
- It is a powerful tool for in silico designs of DNA sequence mutants. |
|
| 11 |
-License: GPL-2 |
|
| 12 |
-Encoding: UTF-8 |
|
| 13 |
-Suggests: |
|
| 14 |
- BiocManager, |
|
| 15 |
- knitr, |
|
| 16 |
- rmarkdown, |
|
| 17 |
- testthat, |
|
| 18 |
- devtools, |
|
| 19 |
- prettydoc, |
|
| 20 |
- glue |
|
| 21 |
-VignetteBuilder: knitr |
|
| 22 |
-Imports: |
|
| 23 |
- seqinr, |
|
| 24 |
- methods, |
|
| 25 |
- Biostrings, |
|
| 26 |
- stringr, |
|
| 27 |
- BiocGenerics |
|
| 28 |
-RoxygenNote: 6.1.1 |
|
| 29 |
-Collate: |
|
| 30 |
- 'regioned_dna_Class.R' |
|
| 31 |
- 'codon_mimic.R' |
|
| 32 |
- 'input_seq.R' |
|
| 33 |
- 'codon_random.R' |
|
| 34 |
- 'codon_to.R' |
|
| 35 |
- 'dinu_to.R' |
|
| 36 |
- 'distance_analysis.R' |
|
| 37 |
- 'region_related.R' |
|
| 38 |
- 'seq_random.R' |
|
| 39 |
- 'zzz.R' |
|
| 40 |
-biocViews: SequenceMatching, ExperimentalDesign, Preprocessing |
|
| 41 |
-BugReports: https://github.com/Koohoko/SynMut/issues |
|
| 42 |
-URL: https://github.com/Koohoko/SynMut |
|
| 1 |
+Package: SynMut |
|
| 2 |
+Type: Package |
|
| 3 |
+Title: SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures |
|
| 4 |
+Version: 1.1.5 |
|
| 5 |
+Authors@R: c(person("Haogao", "Gu", email = "hggu@connect.hku.hk", role = c("aut", "cre")),
|
|
| 6 |
+ person("Leo L.M.", "Poon", email = "llmpoon@hku.hk", role = "led"))
|
|
| 7 |
+Description: |
|
| 8 |
+ There are increasing demands on designing virus mutants with specific dinucleotide or codon composition. |
|
| 9 |
+ This tool can take both dinucleotide preference and/or codon usage bias into account while designing mutants. |
|
| 10 |
+ It is a powerful tool for in silico designs of DNA sequence mutants. |
|
| 11 |
+License: GPL-2 |
|
| 12 |
+Encoding: UTF-8 |
|
| 13 |
+Suggests: |
|
| 14 |
+ BiocManager, |
|
| 15 |
+ knitr, |
|
| 16 |
+ rmarkdown, |
|
| 17 |
+ testthat, |
|
| 18 |
+ devtools, |
|
| 19 |
+ prettydoc, |
|
| 20 |
+ glue |
|
| 21 |
+VignetteBuilder: knitr |
|
| 22 |
+Imports: |
|
| 23 |
+ seqinr, |
|
| 24 |
+ methods, |
|
| 25 |
+ Biostrings, |
|
| 26 |
+ stringr, |
|
| 27 |
+ BiocGenerics |
|
| 28 |
+RoxygenNote: 7.1.0 |
|
| 29 |
+Collate: |
|
| 30 |
+ 'regioned_dna_Class.R' |
|
| 31 |
+ 'codon_mimic.R' |
|
| 32 |
+ 'input_seq.R' |
|
| 33 |
+ 'codon_random.R' |
|
| 34 |
+ 'codon_to.R' |
|
| 35 |
+ 'dinu_to.R' |
|
| 36 |
+ 'distance_analysis.R' |
|
| 37 |
+ 'region_related.R' |
|
| 38 |
+ 'seq_random.R' |
|
| 39 |
+ 'zzz.R' |
|
| 40 |
+biocViews: SequenceMatching, ExperimentalDesign, Preprocessing |
|
| 41 |
+BugReports: https://github.com/Koohoko/SynMut/issues |
|
| 42 |
+URL: https://github.com/Koohoko/SynMut |
| ... | ... |
@@ -7,7 +7,6 @@ |
| 7 | 7 |
|
| 8 | 8 |
*** |
| 9 | 9 |
[DOI: 10.18129/B9.bioc.SynMut](https://doi.org/doi:10.18129/B9.bioc.SynMut) |
| 10 |
-<img border="0" src="https://bioconductor.org/shields/availability/3.9/SynMut.svg"> |
|
| 11 | 10 |
<img border="0" src="https://bioconductor.org/shields/build/devel/bioc/SynMut.svg"> |
| 12 | 11 |
|
| 13 | 12 |
### Introduction |
