| ... | ... |
@@ -1,35 +1,43 @@ |
| 1 | 1 |
# Generated by roxygen2: do not edit by hand |
| 2 | 2 |
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| 3 |
+export(ConvertedIDgenes) |
|
| 3 | 4 |
export(GE_matrix) |
| 5 |
+export(GE_matrix_mean) |
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| 6 |
+export(GetData) |
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| 7 |
+export(GetPathData) |
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| 8 |
+export(GetPathNet) |
|
| 4 | 9 |
export(IPPI) |
| 5 | 10 |
export(SelectedSample) |
| 6 | 11 |
export(average) |
| 7 |
-export(ds_score_crtlk) |
|
| 8 |
-export(euc_dist_crtlk) |
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| 9 |
-export(getKEGGdata) |
|
| 12 |
+export(circleplot) |
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| 13 |
+export(dsscorecrtlk) |
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| 14 |
+export(eucdistcrtlk) |
|
| 10 | 15 |
export(getNETdata) |
| 11 |
-export(list_path_net) |
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| 12 |
-export(matrix_plot) |
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| 13 |
-export(path_net) |
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| 14 |
-export(plotting_cross_talk) |
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| 15 |
-export(proc_path) |
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| 16 |
-export(st_dv) |
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| 16 |
+export(listpathnet) |
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| 17 |
+export(pathnet) |
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| 18 |
+export(plotcrosstalk) |
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| 19 |
+export(stdv) |
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| 17 | 20 |
export(svm_classification) |
| 18 |
-importFrom(AnnotationDbi,as.list) |
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| 19 |
-importFrom(AnnotationDbi,mappedkeys) |
|
| 20 |
-importFrom(KEGGREST,keggGet) |
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| 21 |
-importFrom(KEGGREST,keggList) |
|
| 21 |
+import(ggplot2) |
|
| 22 |
+import(grDevices) |
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| 23 |
+importFrom(MLmetrics,Accuracy) |
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| 24 |
+importFrom(MLmetrics,Sensitivity) |
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| 25 |
+importFrom(MLmetrics,Specificity) |
|
| 22 | 26 |
importFrom(ROCR,performance) |
| 23 | 27 |
importFrom(ROCR,prediction) |
| 24 | 28 |
importFrom(SpidermiR,SpidermiRanalyze_degree_centrality) |
| 25 | 29 |
importFrom(SpidermiR,SpidermiRdownload_net) |
| 26 | 30 |
importFrom(SpidermiR,SpidermiRprepare_NET) |
| 27 | 31 |
importFrom(SpidermiR,SpidermiRquery_spec_networks) |
| 28 |
-importFrom(SpidermiR,SpidermiRquery_species) |
|
| 29 | 32 |
importFrom(e1071,svm) |
| 30 | 33 |
importFrom(e1071,tune) |
| 31 |
-importFrom(grDevices,rainbow) |
|
| 34 |
+importFrom(graphite,convertIdentifiers) |
|
| 35 |
+importFrom(graphite,edges) |
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| 36 |
+importFrom(graphite,nodes) |
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| 37 |
+importFrom(graphite,pathwayDatabases) |
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| 38 |
+importFrom(graphite,pathwayTitle) |
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| 39 |
+importFrom(graphite,pathways) |
|
| 32 | 40 |
importFrom(igraph,get.data.frame) |
| 33 | 41 |
importFrom(igraph,graph.data.frame) |
| 34 | 42 |
importFrom(igraph,induced.subgraph) |
| 35 |
-importFrom(org.Hs.eg.db,org.Hs.egSYMBOL2EG) |
|
| 43 |
+importFrom(reshape2,dcast) |
