Browse code

'prova2'

claudia.cava authored on 15/04/2019 12:35:29
Showing 5 changed files

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@@ -1,7 +1,7 @@
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 Package: StarBioTrek
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 Type: Package
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 Title: StarBioTrek
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-Version: 1.8.4
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+Version: 1.8.5
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 Date: 04-15-2019
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 Author: Claudia Cava,
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     Isabella Castiglioni
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@@ -34,7 +34,6 @@ importFrom(e1071,tune)
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 importFrom(graphite,convertIdentifiers)
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 importFrom(graphite,edges)
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 importFrom(graphite,nodes)
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-importFrom(graphite,pathwayDatabases)
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 importFrom(graphite,pathwayTitle)
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 importFrom(graphite,pathways)
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 importFrom(igraph,get.data.frame)
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@@ -1,14 +1,4 @@
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-#' @title List of species
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-#' @description List of species for network
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-#' @param path_spec variable 
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-#' @importFrom graphite pathwayDatabases
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-#' @examples
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-#' \dontrun{m<-SELECTpathspecies(path_spec)
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-#' }
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-SELECTpathspecies<-function(path_spec){
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-  e<-pathwayDatabases()
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-  return(e)
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-}
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+
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 Uniform<-function(pathwayfrom){
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   mapped_genes<-pathwayfrom
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deleted file mode 100644
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@@ -1,18 +0,0 @@
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-% Generated by roxygen2: do not edit by hand
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-% Please edit documentation in R/internal.R
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-\name{SELECTpathspecies}
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-\alias{SELECTpathspecies}
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-\title{List of species}
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-\usage{
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-SELECTpathspecies(path_spec)
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-}
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-\arguments{
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-\item{path_spec}{variable}
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-}
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-\description{
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-List of species for network
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-}
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-\examples{
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-\dontrun{m<-SELECTpathspecies(path_spec)
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-}
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-}
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@@ -376,7 +376,7 @@ BiocManager::install("StarBioTrek")
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 The user can select the pathway database and species of interest using some functions implemented in graphite [@ref1]
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 ```{r, eval = TRUE}
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-sel<-SELECTpathspecies(path_spec)
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+pathwayDatabases()
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 ```
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 ```{r, eval = TRUE, echo = FALSE}