... | ... |
@@ -34,7 +34,6 @@ importFrom(e1071,tune) |
34 | 34 |
importFrom(graphite,convertIdentifiers) |
35 | 35 |
importFrom(graphite,edges) |
36 | 36 |
importFrom(graphite,nodes) |
37 |
-importFrom(graphite,pathwayDatabases) |
|
38 | 37 |
importFrom(graphite,pathwayTitle) |
39 | 38 |
importFrom(graphite,pathways) |
40 | 39 |
importFrom(igraph,get.data.frame) |
... | ... |
@@ -1,14 +1,4 @@ |
1 |
-#' @title List of species |
|
2 |
-#' @description List of species for network |
|
3 |
-#' @param path_spec variable |
|
4 |
-#' @importFrom graphite pathwayDatabases |
|
5 |
-#' @examples |
|
6 |
-#' \dontrun{m<-SELECTpathspecies(path_spec) |
|
7 |
-#' } |
|
8 |
-SELECTpathspecies<-function(path_spec){ |
|
9 |
- e<-pathwayDatabases() |
|
10 |
- return(e) |
|
11 |
-} |
|
1 |
+ |
|
12 | 2 |
|
13 | 3 |
Uniform<-function(pathwayfrom){ |
14 | 4 |
mapped_genes<-pathwayfrom |
15 | 5 |
deleted file mode 100644 |
... | ... |
@@ -1,18 +0,0 @@ |
1 |
-% Generated by roxygen2: do not edit by hand |
|
2 |
-% Please edit documentation in R/internal.R |
|
3 |
-\name{SELECTpathspecies} |
|
4 |
-\alias{SELECTpathspecies} |
|
5 |
-\title{List of species} |
|
6 |
-\usage{ |
|
7 |
-SELECTpathspecies(path_spec) |
|
8 |
-} |
|
9 |
-\arguments{ |
|
10 |
-\item{path_spec}{variable} |
|
11 |
-} |
|
12 |
-\description{ |
|
13 |
-List of species for network |
|
14 |
-} |
|
15 |
-\examples{ |
|
16 |
-\dontrun{m<-SELECTpathspecies(path_spec) |
|
17 |
-} |
|
18 |
-} |
... | ... |
@@ -376,7 +376,7 @@ BiocManager::install("StarBioTrek") |
376 | 376 |
The user can select the pathway database and species of interest using some functions implemented in graphite [@ref1] |
377 | 377 |
|
378 | 378 |
```{r, eval = TRUE} |
379 |
-sel<-SELECTpathspecies(path_spec) |
|
379 |
+pathwayDatabases() |
|
380 | 380 |
``` |
381 | 381 |
|
382 | 382 |
```{r, eval = TRUE, echo = FALSE} |