| ... | ... |
@@ -34,7 +34,6 @@ importFrom(e1071,tune) |
| 34 | 34 |
importFrom(graphite,convertIdentifiers) |
| 35 | 35 |
importFrom(graphite,edges) |
| 36 | 36 |
importFrom(graphite,nodes) |
| 37 |
-importFrom(graphite,pathwayDatabases) |
|
| 38 | 37 |
importFrom(graphite,pathwayTitle) |
| 39 | 38 |
importFrom(graphite,pathways) |
| 40 | 39 |
importFrom(igraph,get.data.frame) |
| ... | ... |
@@ -1,14 +1,4 @@ |
| 1 |
-#' @title List of species |
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-#' @description List of species for network |
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-#' @param path_spec variable |
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-#' @importFrom graphite pathwayDatabases |
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-#' @examples |
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-#' \dontrun{m<-SELECTpathspecies(path_spec)
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-#' } |
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| 8 |
-SELECTpathspecies<-function(path_spec){
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- e<-pathwayDatabases() |
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- return(e) |
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-} |
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+ |
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| 12 | 2 |
|
| 13 | 3 |
Uniform<-function(pathwayfrom){
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| 14 | 4 |
mapped_genes<-pathwayfrom |
| 15 | 5 |
deleted file mode 100644 |
| ... | ... |
@@ -1,18 +0,0 @@ |
| 1 |
-% Generated by roxygen2: do not edit by hand |
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| 2 |
-% Please edit documentation in R/internal.R |
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-\name{SELECTpathspecies}
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-\alias{SELECTpathspecies}
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-\title{List of species}
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-\usage{
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-SELECTpathspecies(path_spec) |
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-} |
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-\arguments{
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-\item{path_spec}{variable}
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| 11 |
-} |
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-\description{
|
|
| 13 |
-List of species for network |
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-} |
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-\examples{
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-\dontrun{m<-SELECTpathspecies(path_spec)
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-} |
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-} |
| ... | ... |
@@ -376,7 +376,7 @@ BiocManager::install("StarBioTrek")
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| 376 | 376 |
The user can select the pathway database and species of interest using some functions implemented in graphite [@ref1] |
| 377 | 377 |
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| 378 | 378 |
```{r, eval = TRUE}
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| 379 |
-sel<-SELECTpathspecies(path_spec) |
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| 379 |
+pathwayDatabases() |
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| 380 | 380 |
``` |
| 381 | 381 |
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| 382 | 382 |
```{r, eval = TRUE, echo = FALSE}
|
