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README.md
# `MassQL` for `Spectra` [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) [![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/SpectraQL/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/SpectraQL/actions?query=workflow%3AR-CMD-check-bioc) [![codecov](https://codecov.io/github/rformassspectrometry/SpectraQL/branch/main/graph/badge.svg?token=PSUEEOF0GH)](https://codecov.io/github/rformassspectrometry/SpectraQL) [![:name status badge](https://rformassspectrometry.r-universe.dev/badges/:name)](https://rformassspectrometry.r-universe.dev/) [![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0) The Mass Spec Query Language ([MassQL](https://mwang87.github.io/MassQueryLanguage_Documentation/)) is a domain specific language meant to be a succinct way to express a query in a mass spectrometry (MS) centric fashion. It is inspired by SQL, but it attempts to bake in assumptions of MS to make querying much more natural for MS users. The *SpectraQL* package provides support for the MassQL language in R, for MS data represented by `Spectra` objects defined in Bioconductor's [Spectra](https://bioconductor.org/packages/Spectra) package. For an introduction and use cases see the [package vignette](https://rformassspectrometry.github.io/SpectraQL/articles/SpectraQL.html) or the [package documentation](https://rformassspectrometry.github.io/SpectraQL/reference/index.html). # Contributions Contributions are highly welcome and should follow the [contribution guidelines](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions). Also, please check the coding style guidelines in the [RforMassSpectrometry vignette](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html). # License The *SpectraQL* code is provided under a permissive [Artistic 2.0 license](https://opensource.org/licenses/Artistic-2.0). The documentation, including the manual pages and the vignettes, are distributed under a [CC BY-SA license](https://creativecommons.org/licenses/by-sa/4.0/).