Graph ofSpatialCPie
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  • cf5bd16 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:01 -0400;
  • a271e75 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:01 -0400;
  • d6c184f bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:52:33 +0000;
  • 6837e78 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:52:33 +0000;
  • 11300f6 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:48:42 +0000;
  • 6b6ce6f (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:48:42 +0000;
  • 3bf0e75 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:40:04 +0000;
  • 13b0098 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:40:04 +0000;
  • a431235 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:41:16 -0400;
  • 032432f (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:41:16 -0400;
  • a78357f bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:22:15 +0000;
  • 08105d2 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:22:15 +0000;
  • 1e933e9 fix type error by Ludvig Bergenstråhle <jlbergenstrahle@gmail.com> 2020-03-31 20:24:32 +0200;
  • 87dddbb raise error if no assigments are provided by Ludvig Bergenstråhle <jlbergenstrahle@gmail.com> 2020-03-31 19:34:48 +0200;
  • 5791eb6 add example on adjusting score multiplier by Ludvig Bergenstråhle <jlbergenstrahle@gmail.com> 2020-03-31 18:14:44 +0200;
  • b15699a fix field name by Ludvig Bergenstråhle <jlbergenstrahle@gmail.com> 2020-03-31 18:14:18 +0200;
  • cab7f7a Add note on data normalization by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-12-06 18:30:00 +0100;
  • 45a4642 Fix linting error by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-12-06 17:52:27 +0100;
  • bf43ae5 Rename cluster tree to cluster graph by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-12-06 17:52:16 +0100;
  • a55b259 Update vignette by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-12-06 16:47:43 +0100;
  • 49b8443 Merge remote-tracking branch 'upstream/master' by jbergenstrahle <joseph.bergenstrahle@gmail.com> 2019-11-29 17:57:33 +0100;
  • 83ffb18 Make sure that cluster labels are natural numbers by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-11-29 17:11:45 +0100;
  • 9ceb1f8 Fix error when only running on one resolution by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-11-29 16:53:30 +0100;
  • bf99773 Make resolution labels smaller by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-11-29 16:38:12 +0100;
  • 341c1c6 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:24 -0400;
  • f860fcd (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:28 -0400;
  • d8d552a Fix linting errors by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-10-16 10:38:22 +0200;
  • 842ae93 Add support for large array plots by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-10-15 16:31:23 +0200;
  • 9b310cf Remove superfluous whitespace by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-10-15 16:29:59 +0200;
  • e61be5d Add support for non-int resolutions by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-10-15 16:24:04 +0200;
  • bb03f99 Merge branch '1.1' by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 19:23:08 +0200;
  • 47b9f08 Describe how to customize resolutions and assignment function by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 16:16:23 +0200;
  • 4293f8a Add new UI by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 15:50:19 +0200;
  • d1b5ab4 Add top genes barplot to array plot tooltip by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 15:46:24 +0200;
  • 3e14a35 Make default scoring less data sensitive by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 15:37:19 +0200;
  • 74fbd01 Make array plots interactive by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 14:40:33 +0200;
  • 63973e5 Improve numerical stability by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 14:29:10 +0200;
  • e5393b2 Add log messages by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 14:26:37 +0200;
  • 4f5c32e Use data.table instead of dplyr to speed up aggregation by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 14:18:08 +0200;
  • 7aacac3 Add top features barplot to cluster tree tooltip by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-19 17:20:13 +0200;
  • f6afec0 Merge remote-tracking branch 'bioconductor/master' into HEAD by Ludvig Bergenstråhle <ludwigbe@kth.se> 2019-08-23 18:53:43 +0200;
  • b7d991d bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:16:19 -0400;
  • 3949e9a (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:14 -0400;
  • 3dc2bca README update by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2019-01-27 17:50:38 +0100;
  • cd6663f Add r formatting tags by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2019-01-13 20:04:29 +0100;
  • fd080c9 Update installation instructions by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2019-01-13 19:06:50 +0100;
  • 4c65309 Improve style consistency by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-12-02 14:37:29 +0100;
  • 673aa15 JB README by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2019-01-27 17:49:01 +0100;
  • b254a00 V bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-12-13 17:13:08 +0100;
  • c198c37 V bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-12-13 17:10:37 +0100;
  • cf56c36 V bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-12-13 17:06:13 +0100;
  • f0a0084 V bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-12-13 17:03:57 +0100;
  • 4cef435 V bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-12-13 16:54:28 +0100;
  • 5a8ea6c V bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-12-13 16:48:17 +0100;
  • c5a321f V bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-12-11 22:17:31 +0100;
  • 17cc3d7 Version Bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-12-11 21:23:59 +0100;
  • c129c44 Version Bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-12-01 14:57:56 +0100;
  • 773ee0b Version bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-11-30 17:56:55 +0100;
  • 9fa84bc Fix resolution sometimes not being a factor by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-11-30 17:46:09 +0100;
  • ca881a6 Version Bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-11-21 14:27:34 +0100;
  • fcb2224 Changed DESCRIPTION by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-11-21 14:15:19 +0100;
  • 97f469c R version dependency update by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-11-21 13:39:43 +0100;
  • 64ea4ac Version Bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-11-20 16:01:55 +0100;
  • 62dcd27 Fix indexing lower bound by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-11-15 19:35:13 +0100;
  • 3e36e6b Version Bump by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-10-29 19:26:23 +0100;
  • 1e14a03 Vignette text add by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-10-29 19:26:04 +0100;
  • bde8a1d Update vignette by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 16:11:23 +0100;
  • a644f44 Add .makeApp man page by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 12:43:00 +0100;
  • 1cee18d Update vignette by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 12:35:43 +0100;
  • 3784cf9 Change default log multiplier by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 12:46:40 +0100;
  • 25ed8b5 Lower default opacity if background image is used by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 12:49:15 +0100;
  • 83d3a32 Compute relative scores by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 12:51:22 +0100;
  • c03a725 Increase debounce times by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 12:50:58 +0100;
  • 3e5f51d Log counts when computing cluster scores by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 12:33:21 +0100;
  • 87eb5c4 Base gene clustering on z-normalized spatial distributions by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 12:31:19 +0100;
  • a040462 Specify score in log space by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-29 00:15:13 +0100;
  • f9ff7fa Improve gene margin clustering and scoring by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-28 23:46:02 +0100;
  • b6e56c1 Compute distance as mean square deviation by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-28 23:44:53 +0100;
  • 4ff6a5f Always keep parent edge with highest transition proportion by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-27 23:39:14 +0200;
  • 68abb6c Remove ggiraph upper version bound to remove check note by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-26 14:04:50 +0200;
  • 4196821 Add back score multiplier by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-26 13:53:33 +0200;
  • 4f1d555 Fix type mismatch by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-26 14:02:18 +0200;
  • bfa777c Filter edges before call to layout by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-26 13:52:10 +0200;
  • 7c1e943 Add back score multiplier by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-26 13:53:33 +0200;
  • 647b997 Update vignette by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-26 13:28:52 +0200;
  • 8059fda Improve documentation by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-26 13:25:27 +0200;
  • 168016b Merge branch 'master' of github.com:jbergenstrahle/SpatialCPie by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-25 16:58:27 +0200;
  • 584808b Fix BiocCheck notes by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-25 16:57:47 +0200;
  • 6d6c46d Merge branch 'master' of github.com:jbergenstrahle/SpatialCPie by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-10-25 15:10:17 +0200;
  • 5dc13e3 Update Description by Joseph Bergenstråhle <joseph.bergenstrahle@gmail.com> 2018-10-25 15:04:43 +0200;
  • 2f2eb22 Remove shinytest by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-25 14:59:53 +0200;
  • 68e269f Update tests by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-25 14:58:43 +0200;
  • 8af7a64 Update documentation by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-25 14:58:23 +0200;
  • ea530f2 Fix namespace issues by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-25 14:57:00 +0200;
  • 58e37e6 Update vignette by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-24 22:54:26 +0200;
  • 358ab48 Avoid NSE by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-24 22:53:57 +0200;
  • ad88985 Add support for clustering over genes by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-24 18:44:16 +0200;
  • d8d0ce3 Update layout by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-23 21:35:25 +0200;
  • 37dd1b0 Color all resolution-cluster pairs separately by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-23 19:51:27 +0200;
  • 8ec854e Fix indents by Ludvig Bergenstråhle <ludvig.bergenstrahle@scilifelab.se> 2018-10-22 17:10:22 +0200;