<p align="center"> <img src="SpaceMarkersHexWhite.png" width="200" title="SpaceMarkers hex logo"> </p> # SpaceMarkers An R/Bioconductor software tool to identify genes associated with latent space interactions in spatial transcriptomics. ## Citation If you use the SpaceMarkers software please cite: Atul Deshpande, Melanie Loth, et al., [Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces](https://doi.org/10.1016/j.cels.2023.03.004). *Cell Systems,* April 2023. https://doi.org/10.1016/j.cels.2023.03.004 ## Installation You can install the latest Bioconductor release from SpaceMarkers using the code below. ``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("SpaceMarkers") ``` You can install the development version of SpaceMarkers directly from the Github source. ``` install.packages("remotes") remotes::install_github("DeshpandeLab/SpaceMarkers", dependencies = TRUE, build_vignettes = TRUE) ```