Name Mode Size
..
AllClasses.R 100644 1 kb
AllGenerics.R 100755 5 kb
AllUtilities.R 100755 6 kb
Methods-Iterator.R 100644 6 kb
Methods-SeqVarData.R 100644 15 kb
Methods-SeqVarGDSClass.R 100755 28 kb
alternateAlleleDetection.R 100644 5 kb
chromWithPAR.R 100644 1 kb
duplicateDiscordance.R 100755 24 kb
hwe.R 100755 1 kb
inbreedCoeff.R 100755 1 kb
mendelErr.R 100755 6 kb
pca.R 100755 1 kb
refFrac.R 100755 5 kb
regression.R 100644 5 kb
setVariantID.R 100755 1 kb
README.md
# SeqVarTools An interface to the fast-access storage format for VCF data provided in [SeqArray](https://github.com/zhengxwen/SeqArray), with tools for common operations and analysis. ## Bioconductor [http://www.bioconductor.org/packages/release/bioc/html/SeqVarTools.html](http://www.bioconductor.org/packages/release/bioc/html/SeqVarTools.html) * Tutorials * [Introduction to SeqVarTools](https://bioconductor.org/packages/release/bioc/vignettes/SeqVarTools/inst/doc/SeqVarTools.pdf) * [Iterators in SeqVarTools](https://bioconductor.org/packages/devel/bioc/vignettes/SeqVarTools/inst/doc/Iterators.pdf) * [Reference manual](http://www.bioconductor.org/packages/release/bioc/manuals/SeqVarTools/man/SeqVarTools.pdf) * [News](http://bioconductor.org/packages/release/bioc/news/SeqVarTools/NEWS) ## Installation ```R if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("SeqVarTools") ```