SeqArray: Big Data Management of Genome-Wide Sequencing Variants === [](https://travis-ci.org/zhengxwen/SeqArray) ## Features Big data management of genome-wide variants using the CoreArray C++ library: genotypic data and annotations are stored in an array-oriented manner, offering efficient access of genetic variants using the S programming language. ## Bioconductor: Development Version: v1.7.5 [http://www.bioconductor.org/packages/devel/bioc/html/SeqArray.html](http://www.bioconductor.org/packages/devel/bioc/html/SeqArray.html) ## Installation * Bioconductor repository: ```R source("http://bioconductor.org/biocLite.R") biocLite("SeqArray") ``` * Development version from Github: ```R library("devtools") install_github("zhengxwen/gdsfmt") install_github("zhengxwen/SeqArray") ``` The `install_github()` approach requires that you build from source, i.e. `make` and compilers must be installed on your system -- see the [R FAQ](http://cran.r-project.org/faqs.html) for your operating system; you may also need to install dependencies manually. * Install the package from the source code: [gdsfmt](https://github.com/zhengxwen/gdsfmt/tarball/master), [SeqArray](https://github.com/zhengxwen/SeqArray/tarball/master) ```sh wget --no-check-certificate https://github.com/zhengxwen/gdsfmt/tarball/master -O gdsfmt_latest.tar.gz wget --no-check-certificate https://github.com/zhengxwen/SeqArray/tarball/master -O SeqArray_latest.tar.gz ## Or curl -L https://github.com/zhengxwen/gdsfmt/tarball/master/ -o gdsfmt_latest.tar.gz curl -L https://github.com/zhengxwen/SeqArray/tarball/master/ -o SeqArray_latest.tar.gz ## Install R CMD INSTALL gdsfmt_latest.tar.gz R CMD INSTALL SeqArray_latest.tar.gz ```