1. SPsimSeq
  2. Graph
Graph of SPsimSeq
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  • dda4a04 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:18:49 -0400;
  • 9922901 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:18:49 -0400;
  • d553754 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:22:15 -0400;
  • e7dc76b (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:22:15 -0400;
  • 09aa12b bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:06:00 +0000;
  • 87f7290 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:06:00 +0000;
  • 04643b2 Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-21 00:57:28 -0500;
  • 3021ee2 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:00:21 +0000;
  • abaa3d8 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 17:00:21 +0000;
  • 7128636 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:53:06 +0000;
  • 069529a (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:53:06 +0000;
  • 33a4aa2 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:58:00 -0400;
  • 1123f18 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:58:00 -0400;
  • c3130da With r dependency by shawinke <stijn.hawinkel@ugent.be> 2020-05-16 17:47:39 +0200;
  • 842fe56 Version bump by shawinke <stijn.hawinkel@ugent.be> 2020-05-16 15:36:38 +0200;
  • f5a00fe Passing all tests by shawinke <stijn.hawinkel@ugent.be> 2020-05-16 15:36:19 +0200;
  • 113a7ef Withur r version by shawinke <stijn.hawinkel@ugent.be> 2020-05-15 20:51:45 +0200;
  • 64b435e BiocStyle vignette by shawinke <stijn.hawinkel@ugent.be> 2020-05-15 15:45:20 +0200;
  • 6eb5087 Remove sapply from vignette by shawinke <stijn.hawinkel@ugent.be> 2020-05-15 12:54:29 +0200;
  • f18a5fa : loops out of vignette by shawinke <stijn.hawinkel@ugent.be> 2020-05-15 12:51:48 +0200;
  • 309d365 No more : loops by shawinke <stijn.hawinkel@ugent.be> 2020-05-15 12:49:24 +0200;
  • 0e7ea3c Newlines by shawinke <stijn.hawinkel@ugent.be> 2020-05-15 12:44:26 +0200;
  • 92303e6 Buildignore readme by shawinke <stijn.hawinkel@ugent.be> 2020-05-15 12:43:41 +0200;
  • 31d832a Version bump by shawinke <stijn.hawinkel@ugent.be> 2020-04-08 21:19:56 +0200;
  • c748176 Smaller datasets by shawinke <stijn.hawinkel@ugent.be> 2020-04-08 21:19:20 +0200;
  • 8c93351 Last try by shawinke <stijn.hawinkel@ugent.be> 2020-04-08 17:11:32 +0200;
  • 7d3e18f One more try with smaller datasets by shawinke <stijn.hawinkel@ugent.be> 2020-04-08 15:56:15 +0200;
  • 5437ead Version bump and r version by shawinke <stijn.hawinkel@ugent.be> 2020-04-08 09:40:10 +0200;
  • 8a6e66a Cutting down further on calculation time by shawinke <stijn.hawinkel@ugent.be> 2020-04-08 09:39:36 +0200;
  • 788b065 Even smaller tests by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 21:23:49 +0200;
  • 62a2af2 Faster tests by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 19:53:16 +0200;
  • 9e04dd6 Compressed data files and even shorter examples by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 18:22:12 +0200;
  • 7913a62 R version by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 15:06:49 +0200;
  • 98a6a2e Faster rmvnorm generation by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 14:59:38 +0200;
  • 2d6b77d Version bump by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 13:05:52 +0200;
  • af89ac0 compressed data by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 13:05:27 +0200;
  • a10f33b Version bump by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 11:25:42 +0200;
  • 86896ec Version bump by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 11:25:08 +0200;
  • 3d7ac9c Version bump by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 11:12:57 +0200;
  • 54dc935 Without ignored files by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 10:54:50 +0200;
  • 85d5c00 Olde version number by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 10:48:17 +0200;
  • 064a5c2 Update gitignore by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 10:45:40 +0200;
  • 5d5f6be Stop tracking project file by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 10:35:14 +0200;
  • 4ef996c Shorter running times by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 10:25:46 +0200;
  • 0f927d3 Remove R-version dependency by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 10:24:12 +0200;
  • 65ad6e9 Update vignette by shawinke <stijn.hawinkel@ugent.be> 2020-04-07 10:23:59 +0200;
  • bccd123 Update man pages by shawinke <stijn.hawinkel@ugent.be> 2020-04-06 11:39:42 +0200;
  • ed38fa7 Merge pull request <a href="#14">#14</a> from CenterForStatistics-UGent/devel by Alemu Takele Assefa <alemutak@hotmail.com> 2020-04-02 16:23:52 +0200;
  • 8cb54fd Avoid zero carrier density by shawinke <stijn.hawinkel@ugent.be> 2020-04-02 14:31:03 +0200;
  • 3d11616 Alemu's suggestions on model.zero.prob and sample size example by shawinke <stijn.hawinkel@ugent.be> 2020-04-02 14:28:49 +0200;
  • 46c1016 Merge branch 'devel' "Merge of bioconductor devel branch" by shawinke <stijn.hawinkel@ugent.be> 2020-04-01 20:56:12 +0200;
  • 2d00fe6 pruning the git history by shawinke <stijn.hawinkel@ugent.be> 2020-04-01 20:54:26 +0200;
  • 37d4b6f Merge conflicts by shawinke <stijn.hawinkel@ugent.be> 2020-04-01 19:43:59 +0200;
  • 21d240b Finetuning the test by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 18:59:46 +0100;
  • 753f218 News file by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 16:22:29 +0100;
  • 11eceb8 Little glitch with the data by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 16:15:12 +0100;
  • 232f50c Change names of test files by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 16:00:19 +0100;
  • 6e5812f Writing tests by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 14:51:17 +0100;
  • aa84339 Still add tests and compare with old vignette by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 12:02:53 +0100;
  • 8f639fa Rename to evaluateDensities by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 11:51:07 +0100;
  • 864f8d0 Reducing data size by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 11:50:54 +0100;
  • ff684a9 Rerunning the vignette by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 11:22:19 +0100;
  • fe383e4 Starting to add tests by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 11:18:19 +0100;
  • c43a36c Export configexperiment by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 11:18:10 +0100;
  • 7e43fb0 Updating git and docu by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 11:02:54 +0100;
  • 39fec30 Fixed dSPsimSeq by shawinke <stijn.hawinkel@ugent.be> 2020-03-27 10:35:44 +0100;
  • 1ba32f5 Further docu by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 16:40:51 +0100;
  • 4698d76 Getting the vignette ready by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 16:34:44 +0100;
  • c4bbd4b With readme.Rmd by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 16:13:55 +0100;
  • 2dbf6ff Working on warnings by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 14:03:15 +0100;
  • 36d412c Address BiocCheck concerns by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 12:54:39 +0100;
  • eff0998 Updating docu by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 12:48:45 +0100;
  • a345585 Functions running, docu is next by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 11:25:08 +0100;
  • 0e57f54 Data return by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 11:00:34 +0100;
  • aa87d53 Construct the densities only once by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 10:30:24 +0100;
  • 1ec9bee Fixing the zero introduction by shawinke <stijn.hawinkel@ugent.be> 2020-03-26 09:57:57 +0100;
  • 14678e8 zero generation almost done by shawinke <stijn.hawinkel@ugent.be> 2020-03-25 13:09:43 +0100;
  • 2691d94 New functions by shawinke <stijn.hawinkel@ugent.be> 2020-03-25 11:30:45 +0100;
  • 8825c62 Only the zeroes left to do by shawinke <stijn.hawinkel@ugent.be> 2020-03-25 11:30:13 +0100;
  • 94f0810 Figure out the batch stuff by shawinke <stijn.hawinkel@ugent.be> 2020-03-24 15:28:58 +0100;
  • 733a4f7 Reorganizing data generation by shawinke <stijn.hawinkel@ugent.be> 2020-03-24 12:11:25 +0100;
  • dc72c58 Proper sorting in experiment configuration by shawinke <stijn.hawinkel@ugent.be> 2020-03-24 10:31:49 +0100;
  • af4e138 There is work on sampling batches by shawinke <stijn.hawinkel@ugent.be> 2020-03-23 19:39:08 +0100;
  • 4d325e3 Problems with parameter estimation solved by shawinke <stijn.hawinkel@ugent.be> 2020-03-23 16:05:21 +0100;
  • 5c5fa71 Cleaned up candidate gene selection by shawinke <stijn.hawinkel@ugent.be> 2020-03-23 15:20:59 +0100;
  • 686846d Candidate gene selection needs to be updated by shawinke <stijn.hawinkel@ugent.be> 2020-03-23 10:56:07 +0100;
  • f827a35 Now checking the parameter estimation by shawinke <stijn.hawinkel@ugent.be> 2020-03-23 10:18:19 +0100;
  • 66f1dbe Reorganizing the main function by shawinke <stijn.hawinkel@ugent.be> 2020-03-22 10:54:08 +0100;
  • bc3288e Further cleaning the code by shawinke <stijn.hawinkel@ugent.be> 2020-03-21 17:17:52 +0100;
  • 554135e Streamlining the log-transform by shawinke <stijn.hawinkel@ugent.be> 2020-03-21 10:08:19 +0100;
  • 867095e streamlining cpm transform by shawinke <stijn.hawinkel@ugent.be> 2020-03-21 09:32:48 +0100;
  • 7dc04fa Renaming some function by shawinke <stijn.hawinkel@ugent.be> 2020-03-21 09:09:10 +0100;
  • 5fb8afe Streamlining gene selection by shawinke <stijn.hawinkel@ugent.be> 2020-03-20 15:41:41 +0100;
  • dafc6e7 Gene selection by shawinke <stijn.hawinkel@ugent.be> 2020-03-20 15:25:07 +0100;
  • 41ed417 Copula generation by shawinke <stijn.hawinkel@ugent.be> 2020-03-20 15:19:21 +0100;
  • 5fed4a4 Streamlining density estimation by shawinke <stijn.hawinkel@ugent.be> 2020-03-20 15:06:30 +0100;
  • ca03783 Do away with seq_len(length( by shawinke <stijn.hawinkel@ugent.be> 2020-03-20 10:46:21 +0100;
  • 356ab5f Splitting library size generation and estimation by shawinke <stijn.hawinkel@ugent.be> 2020-03-20 10:42:57 +0100;
  • c766d66 Moved all checks into checkinputvariability by shawinke <stijn.hawinkel@ugent.be> 2020-03-20 10:16:29 +0100;
  • bad34ed Retain estimated correlation matrices by shawinke <stijn.hawinkel@ugent.be> 2020-03-20 09:32:32 +0100;