- SPsimSeq
- Graph
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dda4a04
(HEAD -> devel, origin/master, origin/devel, origin/HEAD)
bump x.y.z version to odd y following creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2023-04-25 11:18:49 -0400;
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9922901
(origin/RELEASE_3_17, RELEASE_3_17)
bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>
2023-04-25 11:18:49 -0400;
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d553754
bump x.y.z version to odd y following creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2022-11-01 11:22:15 -0400;
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e7dc76b
(origin/RELEASE_3_16, RELEASE_3_16)
bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>
2022-11-01 11:22:15 -0400;
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09aa12b
bump x.y.z version to odd y following creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2022-04-26 16:06:00 +0000;
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87f7290
(origin/RELEASE_3_15, RELEASE_3_15)
bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2022-04-26 16:06:00 +0000;
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04643b2
Pass serialized S4 instances thru updateObject() by
Hervé Pagès <hpages.on.github@gmail.com>
2021-11-21 00:57:28 -0500;
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3021ee2
bump x.y.z version to odd y following creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-10-26 17:00:21 +0000;
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abaa3d8
(origin/RELEASE_3_14, RELEASE_3_14)
bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-10-26 17:00:21 +0000;
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7128636
bump x.y.z version to odd y following creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-05-19 16:53:06 +0000;
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069529a
(origin/RELEASE_3_13, RELEASE_3_13)
bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2021-05-19 16:53:06 +0000;
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33a4aa2
bump x.y.z version to odd y following creation of RELEASE_3_12 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-10-27 11:58:00 -0400;
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1123f18
(origin/RELEASE_3_12, RELEASE_3_12)
bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>
2020-10-27 11:58:00 -0400;
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c3130da
With r dependency by
shawinke <stijn.hawinkel@ugent.be>
2020-05-16 17:47:39 +0200;
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842fe56
Version bump by
shawinke <stijn.hawinkel@ugent.be>
2020-05-16 15:36:38 +0200;
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f5a00fe
Passing all tests by
shawinke <stijn.hawinkel@ugent.be>
2020-05-16 15:36:19 +0200;
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113a7ef
Withur r version by
shawinke <stijn.hawinkel@ugent.be>
2020-05-15 20:51:45 +0200;
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64b435e
BiocStyle vignette by
shawinke <stijn.hawinkel@ugent.be>
2020-05-15 15:45:20 +0200;
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6eb5087
Remove sapply from vignette by
shawinke <stijn.hawinkel@ugent.be>
2020-05-15 12:54:29 +0200;
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f18a5fa
: loops out of vignette by
shawinke <stijn.hawinkel@ugent.be>
2020-05-15 12:51:48 +0200;
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309d365
No more : loops by
shawinke <stijn.hawinkel@ugent.be>
2020-05-15 12:49:24 +0200;
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0e7ea3c
Newlines by
shawinke <stijn.hawinkel@ugent.be>
2020-05-15 12:44:26 +0200;
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92303e6
Buildignore readme by
shawinke <stijn.hawinkel@ugent.be>
2020-05-15 12:43:41 +0200;
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31d832a
Version bump by
shawinke <stijn.hawinkel@ugent.be>
2020-04-08 21:19:56 +0200;
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c748176
Smaller datasets by
shawinke <stijn.hawinkel@ugent.be>
2020-04-08 21:19:20 +0200;
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8c93351
Last try by
shawinke <stijn.hawinkel@ugent.be>
2020-04-08 17:11:32 +0200;
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7d3e18f
One more try with smaller datasets by
shawinke <stijn.hawinkel@ugent.be>
2020-04-08 15:56:15 +0200;
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5437ead
Version bump and r version by
shawinke <stijn.hawinkel@ugent.be>
2020-04-08 09:40:10 +0200;
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8a6e66a
Cutting down further on calculation time by
shawinke <stijn.hawinkel@ugent.be>
2020-04-08 09:39:36 +0200;
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788b065
Even smaller tests by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 21:23:49 +0200;
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62a2af2
Faster tests by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 19:53:16 +0200;
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9e04dd6
Compressed data files and even shorter examples by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 18:22:12 +0200;
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7913a62
R version by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 15:06:49 +0200;
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98a6a2e
Faster rmvnorm generation by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 14:59:38 +0200;
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2d6b77d
Version bump by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 13:05:52 +0200;
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af89ac0
compressed data by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 13:05:27 +0200;
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a10f33b
Version bump by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 11:25:42 +0200;
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86896ec
Version bump by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 11:25:08 +0200;
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3d7ac9c
Version bump by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 11:12:57 +0200;
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54dc935
Without ignored files by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 10:54:50 +0200;
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85d5c00
Olde version number by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 10:48:17 +0200;
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064a5c2
Update gitignore by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 10:45:40 +0200;
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5d5f6be
Stop tracking project file by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 10:35:14 +0200;
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4ef996c
Shorter running times by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 10:25:46 +0200;
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0f927d3
Remove R-version dependency by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 10:24:12 +0200;
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65ad6e9
Update vignette by
shawinke <stijn.hawinkel@ugent.be>
2020-04-07 10:23:59 +0200;
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bccd123
Update man pages by
shawinke <stijn.hawinkel@ugent.be>
2020-04-06 11:39:42 +0200;
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ed38fa7
Merge pull request <a href="#14">#14</a> from CenterForStatistics-UGent/devel by
Alemu Takele Assefa <alemutak@hotmail.com>
2020-04-02 16:23:52 +0200;
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8cb54fd
Avoid zero carrier density by
shawinke <stijn.hawinkel@ugent.be>
2020-04-02 14:31:03 +0200;
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3d11616
Alemu's suggestions on model.zero.prob and sample size example by
shawinke <stijn.hawinkel@ugent.be>
2020-04-02 14:28:49 +0200;
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46c1016
Merge branch 'devel' "Merge of bioconductor devel branch" by
shawinke <stijn.hawinkel@ugent.be>
2020-04-01 20:56:12 +0200;
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2d00fe6
pruning the git history by
shawinke <stijn.hawinkel@ugent.be>
2020-04-01 20:54:26 +0200;
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37d4b6f
Merge conflicts by
shawinke <stijn.hawinkel@ugent.be>
2020-04-01 19:43:59 +0200;
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-
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21d240b
Finetuning the test by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 18:59:46 +0100;
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753f218
News file by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 16:22:29 +0100;
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11eceb8
Little glitch with the data by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 16:15:12 +0100;
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232f50c
Change names of test files by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 16:00:19 +0100;
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6e5812f
Writing tests by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 14:51:17 +0100;
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aa84339
Still add tests and compare with old vignette by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 12:02:53 +0100;
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8f639fa
Rename to evaluateDensities by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 11:51:07 +0100;
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864f8d0
Reducing data size by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 11:50:54 +0100;
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ff684a9
Rerunning the vignette by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 11:22:19 +0100;
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fe383e4
Starting to add tests by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 11:18:19 +0100;
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c43a36c
Export configexperiment by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 11:18:10 +0100;
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7e43fb0
Updating git and docu by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 11:02:54 +0100;
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39fec30
Fixed dSPsimSeq by
shawinke <stijn.hawinkel@ugent.be>
2020-03-27 10:35:44 +0100;
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1ba32f5
Further docu by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 16:40:51 +0100;
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4698d76
Getting the vignette ready by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 16:34:44 +0100;
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c4bbd4b
With readme.Rmd by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 16:13:55 +0100;
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2dbf6ff
Working on warnings by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 14:03:15 +0100;
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36d412c
Address BiocCheck concerns by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 12:54:39 +0100;
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eff0998
Updating docu by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 12:48:45 +0100;
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a345585
Functions running, docu is next by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 11:25:08 +0100;
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0e57f54
Data return by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 11:00:34 +0100;
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aa87d53
Construct the densities only once by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 10:30:24 +0100;
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1ec9bee
Fixing the zero introduction by
shawinke <stijn.hawinkel@ugent.be>
2020-03-26 09:57:57 +0100;
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14678e8
zero generation almost done by
shawinke <stijn.hawinkel@ugent.be>
2020-03-25 13:09:43 +0100;
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2691d94
New functions by
shawinke <stijn.hawinkel@ugent.be>
2020-03-25 11:30:45 +0100;
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8825c62
Only the zeroes left to do by
shawinke <stijn.hawinkel@ugent.be>
2020-03-25 11:30:13 +0100;
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94f0810
Figure out the batch stuff by
shawinke <stijn.hawinkel@ugent.be>
2020-03-24 15:28:58 +0100;
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733a4f7
Reorganizing data generation by
shawinke <stijn.hawinkel@ugent.be>
2020-03-24 12:11:25 +0100;
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dc72c58
Proper sorting in experiment configuration by
shawinke <stijn.hawinkel@ugent.be>
2020-03-24 10:31:49 +0100;
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af4e138
There is work on sampling batches by
shawinke <stijn.hawinkel@ugent.be>
2020-03-23 19:39:08 +0100;
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4d325e3
Problems with parameter estimation solved by
shawinke <stijn.hawinkel@ugent.be>
2020-03-23 16:05:21 +0100;
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5c5fa71
Cleaned up candidate gene selection by
shawinke <stijn.hawinkel@ugent.be>
2020-03-23 15:20:59 +0100;
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686846d
Candidate gene selection needs to be updated by
shawinke <stijn.hawinkel@ugent.be>
2020-03-23 10:56:07 +0100;
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f827a35
Now checking the parameter estimation by
shawinke <stijn.hawinkel@ugent.be>
2020-03-23 10:18:19 +0100;
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66f1dbe
Reorganizing the main function by
shawinke <stijn.hawinkel@ugent.be>
2020-03-22 10:54:08 +0100;
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bc3288e
Further cleaning the code by
shawinke <stijn.hawinkel@ugent.be>
2020-03-21 17:17:52 +0100;
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554135e
Streamlining the log-transform by
shawinke <stijn.hawinkel@ugent.be>
2020-03-21 10:08:19 +0100;
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867095e
streamlining cpm transform by
shawinke <stijn.hawinkel@ugent.be>
2020-03-21 09:32:48 +0100;
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7dc04fa
Renaming some function by
shawinke <stijn.hawinkel@ugent.be>
2020-03-21 09:09:10 +0100;
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5fb8afe
Streamlining gene selection by
shawinke <stijn.hawinkel@ugent.be>
2020-03-20 15:41:41 +0100;
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dafc6e7
Gene selection by
shawinke <stijn.hawinkel@ugent.be>
2020-03-20 15:25:07 +0100;
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41ed417
Copula generation by
shawinke <stijn.hawinkel@ugent.be>
2020-03-20 15:19:21 +0100;
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5fed4a4
Streamlining density estimation by
shawinke <stijn.hawinkel@ugent.be>
2020-03-20 15:06:30 +0100;
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ca03783
Do away with seq_len(length( by
shawinke <stijn.hawinkel@ugent.be>
2020-03-20 10:46:21 +0100;
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356ab5f
Splitting library size generation and estimation by
shawinke <stijn.hawinkel@ugent.be>
2020-03-20 10:42:57 +0100;
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c766d66
Moved all checks into checkinputvariability by
shawinke <stijn.hawinkel@ugent.be>
2020-03-20 10:16:29 +0100;
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bad34ed
Retain estimated correlation matrices by
shawinke <stijn.hawinkel@ugent.be>
2020-03-20 09:32:32 +0100;