1. SMITE
  2. Graph
Graph of SMITE
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • |\
  • | *
  • | *
  • | *
  • | *
  • | *
  • | | *
  • | * |
  • | * |
  • | |/
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | | *
  • | * |
  • | | *
  • | |/
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | *
  • | | *
  • | |/
  • | *
  • | *
  • | *
  • | *
  • | | *
  • | * |
  • | | *
  • | * |
  • | * |
  • | | *
  • | |/
  • | *
  • | *
  • | *
  • | *
  • | *
  • * |
  • | *
  • * |
  • /
  • *
  • 0dda7c2 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:47:29 -0400;
  • 7e7699a (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:47:29 -0400;
  • e2077af bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:44:07 -0400;
  • 876db9d (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:44:07 -0400;
  • 920bda8 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:12:52 -0400;
  • 1293d18 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:12:52 -0400;
  • b145409 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:29:16 +0000;
  • 2ec1f99 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:29:16 +0000;
  • 80aaa0f Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-21 00:55:42 -0500;
  • 39742bf bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:25:15 +0000;
  • 6979357 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:25:15 +0000;
  • 2bc3447 BiocCheck 2.0 by Andrew Johnston <Adj38@cornell.edu> 2021-10-20 08:13:52 -0400;
  • f6b7944 BiocCheck works by Andrew Johnston <Adj38@cornell.edu> 2021-10-20 08:12:26 -0400;
  • 35bfd47 rmarkdown suggests by Andrew Johnston <Adj38@cornell.edu> 2021-08-24 16:58:56 -0400;
  • bceabe8 rmarkdown suggests by Andrew Johnston <Adj38@cornell.edu> 2021-08-24 16:57:27 -0400;
  • dbee770 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:17:52 +0000;
  • 7acefe7 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:17:52 +0000;
  • 5fff203 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:11:05 -0400;
  • 7c95087 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:11:05 -0400;
  • dbe7ea5 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:54:26 +0000;
  • 28365aa (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:54:26 +0000;
  • 130b85f Fix runGOseq description by Andrew <andrew@Andrews-MBP.home> 2020-03-04 06:49:14 -0500;
  • ccef709 fix generic error by Andrew <andrew@Andrews-MBP.fios-router.home> 2020-02-17 18:30:18 -0500;
  • 60e0527 added feature to find CpG coverage for GoSeq by Andrew <andrew@Andrews-MBP.fios-router.home> 2020-01-30 06:34:22 -0500;
  • 3f3a25c Switch from kegg.db to KEGGREST by Andrew <andrew@Andrews-MBP.fios-router.home> 2020-01-30 06:12:49 -0500;
  • 6ece729 Fixed conflicts in version change by Andrew <andrew@Andrews-MBP.home> 2020-01-23 11:58:48 -0500;
  • 23084cd bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:40:25 -0400;
  • c3867a6 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:33 -0400;
  • 1e6c8ea Small adjustment to PvalueAnnotation prototype by Hervé Pagès <hpages@fredhutch.org> 2019-05-13 21:12:34 -0700;
  • 0c97261 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:13:13 -0400;
  • e6fcd72 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:00 -0400;
  • fbe69e0 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:51:05 -0500;
  • 00f53da Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:51:03 -0500;
  • fe1fda8 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:35 -0400;
  • 728dba0 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:00 -0400;
  • 2905890 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:41 -0400;
  • 42f65a1 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:40 -0400;
  • 3bc8994 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:18 -0400;
  • d22b965 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:12 -0400;
  • e4adb20 Fixed igraph: they renamed functions by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2017-08-10 22:09:05 +0000;
  • 77699c7 (origin/RELEASE_3_5, RELEASE_3_5) Sample commit by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2017-07-26 03:22:00 +0000;
  • 983555b bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • f9c0466 Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 6ecec2f bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • c48c24a Remove SMITE/.svn/ folder. The .svn/ folders are administrative folders that are automatically created inside a working copy by the svn client. They should never be added and committed to the server. Doing so breaks 'svn co' and 'svn up'. by Herve Pages <hpages@fhcrc.org> 2017-03-27 20:51:31 +0000;
  • 3ca96e7 Remove SMITE/SMITE/ folder. Looks like an unintended copy of the SMITE source tree that is nested inside the (real) SMITE source tree. Also, because it has a .svn/ folder in it, it breaks 'svn co' and 'svn up'. by Herve Pages <hpages@fhcrc.org> 2017-03-27 20:44:18 +0000;
  • b674751 Rebase by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2017-03-27 12:15:38 +0000;
  • 3b65c75 RProj ignore by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2017-03-27 11:16:16 +0000;
  • fbf4fb6 Merge branch 'master' into devel by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2017-03-24 22:55:56 +0000;
  • c544fdb bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 4d7e594 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • cc3d127 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 185b24f Added label_shadow argument to plotModule command. Changed generic, code, and manual for update by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2016-09-13 02:09:01 +0000;
  • 98d3dbe Fixed an issue with the correlation matrix such that only significant p values are considered (thus increasing the intercorrelations) by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2016-09-01 19:06:39 +0000;
  • ca30d38 merge_conflicts by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2016-08-26 17:02:49 +0000;
  • f663a94 (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • f4b7911 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • 7e2a405 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • e6ffa4c Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • f7e223b bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 350901f Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 221f325 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 3c568c1 fixed dependency issue that prevented the vignette from loading by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2016-04-20 22:36:34 +0000;
  • e147614 remove duplicate info by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-04-01 19:19:18 +0000;
  • d0e16f2 Added PI as Author by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2016-02-19 17:54:25 +0000;
  • 81c8c1e git_fix2 by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2016-02-16 23:02:37 +0000;
  • c7189b4 svn_git Fix by a.johnston <a.johnston@bc3139a8-67e5-0310-9ffc-ced21a209358> 2016-02-16 22:39:13 +0000;
  • 991dffb svn_git Fix by Andrew Damon Johnston <Andrew.Johnston@med.einstein.yu.edu> 2016-02-16 22:39:13 +0000;
  • 931085f Adding SMITE, Mergeomics by mtmorgan@fhcrc.org <mtmorgan@fhcrc.org@bc3139a8-67e5-0310-9ffc-ced21a209358> 2016-02-12 23:53:53 +0000;
  • 0f346c2 Adding SMITE, Mergeomics by Martin Morgan <mtmorgan@fhcrc.org> 2016-02-12 23:53:53 +0000;