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  • 7446782 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:12:21 -0400;
  • cbc5c48 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:12:21 -0400;
  • 3429aa6 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:27:45 +0000;
  • 3cfeba1 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:27:45 +0000;
  • e9c9e42 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:23:13 +0000;
  • 0b80b21 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:23:13 +0000;
  • 65e7114 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:16:12 +0000;
  • b9dc057 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:16:12 +0000;
  • 7ee7dce bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:08:48 -0400;
  • f802269 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:08:48 -0400;
  • 39fe623 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:51:59 +0000;
  • 4353241 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:51:59 +0000;
  • be6d09e bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:40:01 -0400;
  • 3e51fb9 (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:28 -0400;
  • 09a2aa0 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:13:02 -0400;
  • 3feb4fa (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:57 -0400;
  • a775130 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:35 -0400;
  • 5e62f40 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:59 -0400;
  • 1ebd96e bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:41 -0400;
  • b7825b9 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:38 -0400;
  • ac89dd0 Order of breakInChunks() arguments 'chunksize' and 'nchunk' was switched in IRanges 2.13.16 by Hervé Pagès <hpages@fredhutch.org> 2018-01-25 10:08:07 -0800;
  • cecd407 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:16 -0400;
  • ca764e5 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:06 -0400;
  • bebb0c5 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 10a60b9 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • b22797c bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • f751334 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 0f9c2fe (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 3e44327 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 3dd975a (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • ee9e6ac Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • 4c62823 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 030fe67 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • 6cb181b bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 556bf12 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 61109e7 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 904680f for duplicated function names by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-31 09:38:20 +0000;
  • 201f3fb remove test comment by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-31 08:14:30 +0000;
  • 3259599 debug for uniTest by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-31 07:38:15 +0000;
  • c98369a debug for uniTest by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-31 07:31:26 +0000;
  • 8d32aed more compact script by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-30 16:07:21 +0000;
  • e36edbb (origin/RELEASE_3_2, RELEASE_3_2) bug fixes in duplicated genotypes by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-22 13:52:22 +0000;
  • 19e290e merged r115096 from trunk by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-22 12:19:23 +0000;
  • b832a88 some updates on duplicated genotype by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-22 10:18:37 +0000;
  • 18712f0 drop=FALSE debug in replicated genotype trace back by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-21 08:23:32 +0000;
  • 273c5d4 remove doMC and add doParallel by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-20 12:06:42 +0000;
  • 8217541 debug to trace back duplicated genotypes to each position by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-03-17 08:20:53 +0000;
  • e47abd4 mark as unsupported on windows by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-02-02 19:59:15 +0000;
  • 1fac190 mark as not supported on Windows by Herve Pages <hpages@fhcrc.org> 2016-01-08 02:05:09 +0000;
  • aea4ab9 update doParallel;fix the bug to trace back duplicated genotype by Xiaobin Xing <xiaobinxing0316@gmail.com> 2016-01-04 16:07:24 +0000;
  • 69864f8 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 464cd32 Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 6d580b6 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • f98d4d5 change Author list by Xiaobin Xing <xiaobinxing0316@gmail.com> 2015-10-08 12:55:23 +0000;
  • c1100b9 Add DAPAR, gcatest, iCheck, Imetagene, lfa, MEAL, metagenomeFeatures, pathVar, Prostar, SICtools, SISPA, SWATH2stats by James Hester <jhester@fredhutch.org> 2015-10-06 17:15:15 +0000;