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Order of breakInChunks() arguments 'chunksize' and 'nchunk' was switched in IRanges 2.13.16

Hervé Pagès authored on 25/01/2018 18:08:07
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@@ -1,7 +1,7 @@
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 Package: SICtools
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 Type: Package
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 Title: Find SNV/Indel differences between two bam files with near relationship
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-Version: 1.9.0
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+Version: 1.9.1
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 Date: 2014-12-11
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 Author: Xiaobin Xing, Wu Wei
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 Maintainer: Xiaobin Xing <xiaobinxing0316@gmail.com>
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@@ -94,7 +94,7 @@ snpDiff <-
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 	ppFiles <- PileupFiles(c(bam1,bam2))
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 	## split into 10M block
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-	regSplit <- shift(as(breakInChunks(regEnd - regStart + 1,1e7L),'IRanges'),regStart-1)
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+	regSplit <- shift(as(breakInChunks(regEnd - regStart + 1, chunksize=1e7L),'IRanges'),regStart-1)
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 	## for each region
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 	regSplitDiffFunc <- function(splitIndex){