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-% plot silhouette

-\name{SGC_plot_silhouette}

-\alias{SGC_plot_silhouette}

-\title{Plots Gene Silhouette Index In SGC Pipeline}

-\description{

-    Plots the Silhouette index of genes in SGC pipeline.

-}

-\usage{

-    SGC_plot_silhouette(df, tit = "Gene Silhouette Index",

-                        xname = "genes", yname = "silhouette index")

-}

-\arguments{

-    \item{df}{the silhouette dataframe returned by clustering function in SGC pipeline}

-    \item{tit}{plot title, default "Gene Silhouette Index"}

-    \item{xname}{x-axis title, default "genes"}

-    \item{yname}{y-axis title, default "silhouette index"}

-}

-

-\details{

-In order to plot silhouette index, `sil` parameter in clustering function must be set to TRUE.

-}

-

-

-\value{

-    returns the plot, an object of ggplot class.

-}

-

-

-

-\references{

-    \href{https://arxiv.org/abs/2209.10545}{Aghaieabiane, N and Koutis, I (2022) SGC: A semi-supervised pipeline for gene clustering using self-training approach in gene co-expression networks}

-}

-

-\seealso{

-    \code{\link{clustering}}

-    \code{\link{SGC_ezPLOT}}

-    \href{https://github.com/na396/SGC}{SGC Toturial}

-}

-\examples{

-

-## let silhouetteDF be the silhouette field in output of clustering function

-# to plot the conductance value

-pl = SGC_plot_silhouette(df = silhouetteDF)

-

-}

-