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bump x.y.z version to odd y following creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 13:46:07
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.62.0
                                     +Version: 1.63.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 13:46:07
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.61.0
                                     +Version: 1.62.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to odd y following creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:03:39
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.60.0
                                     +Version: 1.61.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:03:39
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.59.0
                                     +Version: 1.60.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:00:33
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.58.0
                                     +Version: 1.59.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:00:33
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.57.0
                                     +Version: 1.58.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 15:51:42
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.56.0
                                     +Version: 1.57.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 15:51:42
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.55.0
                                     +Version: 1.56.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 15:39:55
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.54.0
                                     +Version: 1.55.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 15:39:55
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.53.0
                                     +Version: 1.54.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to odd y following creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 14:32:27
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.52.0
                                     +Version: 1.53.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 14:32:26
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.51.0
                                     +Version: 1.52.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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Nitesh Turaga authored on 27/04/2020 18:16:06
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.50.0
                                     +Version: 1.51.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:16:06
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.49.0
                                     +Version: 1.50.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to odd y after creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:34:47
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.48.0
                                     +Version: 1.49.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z version to even y prior to creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:07:53
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.47.0
                                     +Version: 1.48.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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Nitesh Turaga authored on 02/05/2019 16:10:46
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.46.0
                                     +Version: 1.47.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 15:53:09
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.45.0
                                     +Version: 1.46.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to odd y after creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:54:27
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.44.0
                                     +Version: 1.45.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:41:44
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.43.0
                                     +Version: 1.44.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to odd y after creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:41:37
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.42.0
                                     +Version: 1.43.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:35:08
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.41.0
                                     +Version: 1.42.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to odd y after creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:52:07
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.40.0
                                     +Version: 1.41.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:39:22
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.39.0
                                     +Version: 1.40.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to odd y after creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@129129 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 24/04/2017 19:50:57
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.38.0
                                     +Version: 1.39.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to even y prior to creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@129126 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 24/04/2017 19:25:24
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.37.0
                                     +Version: 1.38.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to odd 'y' after creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@122712 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 17/10/2016 19:10:43
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.36.0
                                     +Version: 1.37.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump x.y.z versions to even 'y' prior to creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@122710 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 17/10/2016 18:45:06
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.35.0
                                     +Version: 1.36.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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bump version after creating 3.3 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@117081 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/05/2016 21:30:44
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.34.0
                                     +Version: 1.35.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

Browse code

Bump versions prior to creation of 3.3 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@117079 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/05/2016 21:20:18
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.33.0
                                     +Version: 1.34.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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Bumped version number of all packages after creation of 3.2 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@109592 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2015 19:59:53
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.32.0
                                     +Version: 1.33.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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Bumped versions of all packages prior to creating 3.2 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@109589 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2015 19:36:05
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.31.0
                                     +Version: 1.32.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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Bump versions in trunk after creation of 3.1 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@102594 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 16/04/2015 20:02:44
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.30.0
                                     +Version: 1.31.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

Browse code

Bump versions prior to creating 3.1 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@102591 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 16/04/2015 19:42:01
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.29.0
                                     +Version: 1.30.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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Bumping versions after creating 3.0 release branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@95443 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2014 21:47:41
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.28.0
                                     +Version: 1.29.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

Browse code

Bump package versions prior to creating the 3.0 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@95439 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2014 21:38:33
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                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.27.1
                                     +Version: 1.28.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

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StatisticalMethod corrected biocView

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@94929 bc3139a8-67e5-0310-9ffc-ced21a209358

Jasmina Bogojeska authored on 03/10/2014 09:57:56
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@@ -14,4 +14,4 @@ License: LGPL
                                      Depends: R (>= 2.5.0)
                                      Imports: methods, graph, Biobase, Hmisc
                                      Suggests: Rgraphviz
                                     -biocViews: StatisctialMethod
                                     +biocViews: StatisticalMethod

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Bumped the version number in DESCRIPTION file.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@90955 bc3139a8-67e5-0310-9ffc-ced21a209358

Jasmina Bogojeska authored on 03/06/2014 12:10:53
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@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.27.0
                                     +Version: 1.27.1
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for

Browse code

Removed packages from Depends and left them only in Imports

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@89060 bc3139a8-67e5-0310-9ffc-ced21a209358

Jasmina Bogojeska authored on 16/04/2014 06:55:14
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History View file @ 98ec75d

@@ -3,7 +3,7 @@ Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                      Version: 1.27.0
                                      Author: Jasmina Bogojeska
                                     -Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                     +Maintainer: Jasmina Bogojeska <jasmina.bogojeska@gmail.com>
                                      Description: Rtreemix is a package that offers an environment for
                                              estimating the mutagenetic trees mixture models from
                                              cross-sectional data and using them for various predictions. It
@@ -11,7 +11,7 @@ Description: Rtreemix is a package that offers an environment for
                                              likelihood computations, model comparisons, waiting time
                                              estimations, stability analysis, etc.
                                      License: LGPL
                                     -Depends: R (>= 2.5.0), methods, graph, Biobase
                                     +Depends: R (>= 2.5.0)
                                      Imports: methods, graph, Biobase, Hmisc
                                      Suggests: Rgraphviz
                                      biocViews: StatisctialMethod

Browse code

Second version bump after creating 2.14 release branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@88840 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 11/04/2014 21:21:21
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@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.26.0
                                     +Version: 1.27.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for

Browse code

First version bump prior to creating 2.14 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@88838 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 11/04/2014 21:07:21
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@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.25.3
                                     +Version: 1.26.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for

Browse code

codae update

edit NAMESPACE file to remove R CMD check warning

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@88562 bc3139a8-67e5-0310-9ffc-ced21a209358

Sonali Arora authored on 07/04/2014 23:09:04
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DESCRIPTION

History View file @ 63fc70b

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.25.2
                                     +Version: 1.25.3
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for

Browse code

modify to new biocViews to DESCRIPTION file

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@87035 bc3139a8-67e5-0310-9ffc-ced21a209358

Sonali Arora authored on 04/03/2014 22:12:21
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DESCRIPTION

History View file @ 9b221d0

@@ -1,12 +1,17 @@
                                     -Package: Rtreemix
                                     -Type: Package
                                     -Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.25.1
                                     -Author: Jasmina Bogojeska
                                     -Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                     -Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.
                                     -License: LGPL
                                     -Depends: R (>= 2.5.0), methods, graph, Biobase
                                     -Imports: methods, graph, Biobase, Hmisc
                                     -Suggests: Rgraphviz
                                     -biocViews: Bioinformatics
                                     +Package: Rtreemix
                                     +Type: Package
                                     +Title: Rtreemix: Mutagenetic trees mixture models.
                                     +Version: 1.25.2
                                     +Author: Jasmina Bogojeska
                                     +Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                     +Description: Rtreemix is a package that offers an environment for
                                     +        estimating the mutagenetic trees mixture models from
                                     +        cross-sectional data and using them for various predictions. It
                                     +        includes functions for fitting the trees mixture models,
                                     +        likelihood computations, model comparisons, waiting time
                                     +        estimations, stability analysis, etc.
                                     +License: LGPL
                                     +Depends: R (>= 2.5.0), methods, graph, Biobase
                                     +Imports: methods, graph, Biobase, Hmisc
                                     +Suggests: Rgraphviz
                                     +biocViews: StatisctialMethod

Browse code

rename inst/doc to vignettes and bump version

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@82468 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 01/11/2013 20:02:13
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@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.25.0
                                     +Version: 1.25.1
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

bump version after release branch has been created

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@81644 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 14/10/2013 21:47:19
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DESCRIPTION

History View file @ ed65cec

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.24.0
                                     +Version: 1.25.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

bump versions prior to creating BioC 2.13 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@81642 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 14/10/2013 21:29:21
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DESCRIPTION

History View file @ 4716d9d

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.23.1
                                     +Version: 1.24.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

replace deprecated .path.package() with path.package()

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@81253 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 07/10/2013 22:46:57
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History View file @ 4004edc

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.23.0
                                     +Version: 1.23.1
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bump y in version x.y.z to odd number in devel

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@75270 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/04/2013 22:06:11
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@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.22.0
                                     +Version: 1.23.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

bump y of x.y.z version number for BioC 2.12 release

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@75263 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/04/2013 21:32:27
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@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.21.2
                                     +Version: 1.22.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

bump version

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@74773 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 24/03/2013 23:01:22
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DESCRIPTION

History View file @ 657291b

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.21.1
                                     +Version: 1.21.2
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

remove dependence on RConverters.h

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@72257 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/01/2013 07:10:19
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DESCRIPTION

History View file @ 896a444

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.21.0
                                     +Version: 1.21.1
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

bump package versions after creating 2.11 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@70052 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 01/10/2012 22:43:56
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@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.20.0
                                     +Version: 1.21.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bump all packages before creating 2.11 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@70050 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 01/10/2012 22:16:24
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History View file @ ffd8582

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.19.1
                                     +Version: 1.20.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Fixed malformed 'plot' alias in man page.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@69946 bc3139a8-67e5-0310-9ffc-ced21a209358

Valerie Obenchain authored on 28/09/2012 17:28:57
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@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.19.0
                                     +Version: 1.19.1
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

bumped version numbers after creating 2.10 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@64680 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 30/03/2012 22:15:56
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History View file @ 61de3e9

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.18.0
                                     +Version: 1.19.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

first version bump prior to creating 2.10 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@64678 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 30/03/2012 22:05:02
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History View file @ 4c694be

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.17.0
                                     +Version: 1.18.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

version bump for start of 2.10 development cycle

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@59924 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 31/10/2011 23:12:28
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History View file @ 9248ffe

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.16.0
                                     +Version: 1.17.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

bumped package version numbers prior to creating 2.9 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@59920 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 31/10/2011 22:59:03
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History View file @ 0e7e769

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.15.0
                                     +Version: 1.16.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumped version numbers again for new BioC 2.9 devel cycle.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@54802 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/04/2011 22:36:43
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History View file @ e3b9880

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.14.0
                                     +Version: 1.15.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumped version numbers for BioC 2.8 release.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@54800 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/04/2011 22:27:35
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@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.13.0
                                     +Version: 1.14.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumped version numbers again for new BioC 2.8 devel cycle. ERRATA: Previous bump was for BioC 2.7 release (of course), not 2.6!

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@50295 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 18/10/2010 05:57:44
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History View file @ d213623

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.12.0
                                     +Version: 1.13.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumped version numbers for BioC 2.6 release

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@50293 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 18/10/2010 05:34:23
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History View file @ 8a62a68

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.11.0
                                     +Version: 1.12.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumped version numbers for BioC 2.7 trunk

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@46405 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 22/04/2010 18:45:15
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History View file @ 3a8873b

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.10.0
                                     +Version: 1.11.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumped version numbers for BioC 2.6 release

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@46401 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 22/04/2010 18:21:23
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History View file @ 740be39

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.9.0
                                     +Version: 1.10.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Package version bump for BioC 2.6 devel.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@42686 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 27/10/2009 23:45:24
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History View file @ 4d5c995

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.8.0
                                     +Version: 1.9.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Package version bump for BioC 2.5 release.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@42684 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 27/10/2009 23:33:29
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History View file @ 53f98fa

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.7.0
                                     +Version: 1.8.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumped pkg versions for BioC 2.5 devel line.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@39015 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 20/04/2009 23:44:07
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History View file @ d815297

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.6.0
                                     +Version: 1.7.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumped pkg versions for BioC 2.4 release.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@39013 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 20/04/2009 23:24:12
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History View file @ b7c932d

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.5.2
                                     +Version: 1.6.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Changed biocViews entry of Statistics to Bioinformatics.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@38070 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 19/03/2009 22:07:09
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History View file @ e6656a1

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.5.1
                                     +Version: 1.5.2
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.
@@ -9,4 +9,4 @@ License: LGPL
                                      Depends: R (>= 2.5.0), methods, graph, Biobase
                                      Imports: methods, graph, Biobase, Hmisc
                                      Suggests: Rgraphviz
                                     -biocViews: Statistics
                                     +biocViews: Bioinformatics

Browse code

fixed Rd issues found by Rdversion 2 parser

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@37221 bc3139a8-67e5-0310-9ffc-ced21a209358

Chao-Jen Wong authored on 06/02/2009 21:43:01
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History View file @ 59fa52d

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.5.0
                                     +Version: 1.5.1
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumping version numbers for BioC 2.4 devel.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@34814 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 21/10/2008 22:46:31
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History View file @ 568c4db

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.4.0
                                     +Version: 1.5.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Bumping version numbers for BioC 2.3 release.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@34811 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 21/10/2008 22:32:58
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History View file @ c57cfc5

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.3.1
                                     +Version: 1.4.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

make it compile on openSUSE 11.0/gcc 4.3.1

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@33811 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 18/09/2008 19:26:45
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History View file @ 3844959

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.3.0
                                     +Version: 1.3.1
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Updating the version number for the trunk post-BioC 2.2 release.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@31432 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 30/04/2008 00:25:58
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History View file @ 19e2d5b

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.2.0
                                     +Version: 1.3.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Updating the version number for the BioC 2.2 release.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@31430 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 29/04/2008 23:50:18
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History View file @ 8539d66

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.0.1
                                     +Version: 1.2.0
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.

Browse code

Fixed man files to allow creation of Rtreemix-manual.pdf document.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@30965 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 09/04/2008 18:34:51
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DESCRIPTION

History View file @ 952f967

@@ -1,7 +1,7 @@
                                      Package: Rtreemix
                                      Type: Package
                                      Title: Rtreemix: Mutagenetic trees mixture models.
                                     -Version: 1.0.0
                                     +Version: 1.0.1
                                      Author: Jasmina Bogojeska
                                      Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                      Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.
@@ -10,4 +10,3 @@ Depends: R (>= 2.5.0), methods, graph, Biobase
                                      Imports: methods, graph, Biobase, Hmisc
                                      Suggests: Rgraphviz
                                      biocViews: Statistics
+                                    -

Browse code

added the Rtreemix package and removed the bim package

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@28790 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 16/11/2007 21:25:16
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History View file @ 6fe809c

                                     new file mode 100644
@@ -0,0 +1,13 @@
                                     +Package: Rtreemix
                                     +Type: Package
                                     +Title: Rtreemix: Mutagenetic trees mixture models.
                                     +Version: 1.0.0
                                     +Author: Jasmina Bogojeska
                                     +Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
                                     +Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.
                                     +License: LGPL
                                     +Depends: R (>= 2.5.0), methods, graph, Biobase
                                     +Imports: methods, graph, Biobase, Hmisc
                                     +Suggests: Rgraphviz
                                     +biocViews: Statistics
+                                    +