edit NAMESPACE file to remove R CMD check warning
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@88562 bc3139a8-67e5-0310-9ffc-ced21a209358
Sonali Arora authored on 07/04/2014 23:09:04
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@28790 bc3139a8-67e5-0310-9ffc-ced21a209358
Herve Pages authored on 16/11/2007 21:25:16
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+useDynLib(Rtreemix) |
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+ |
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+import(Biobase) |
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+import(methods) |
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+import(graph) |
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+ |
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+importFrom("Hmisc", "rcorr")
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+ |
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+##import(Rgraphviz) |
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+importFrom("graphics", "plot")
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+ |
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+## Classes to be exported |
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+exportClasses(RtreemixData, RtreemixModel, |
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+ RtreemixSim, RtreemixStats, RtreemixGPS) |
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+ |
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+## Methods to be exported |
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+exportMethods(initialize, print, show, |
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+ Sample, Events, Patients, Description, sampleSize, eventsNum, ##RtreemixData |
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+ "Events<-", "Patients<-", "Description<-", ##RtreemixData |
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+ Weights, "Weights<-", WeightsCI, Resp, CompleteMat, Star, Trees, numTrees, getTree, getData, plot, ## RtreemixModel |
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+ Model, LogLikelihoods, WLikelihoods, getResp, ## RtreemixStats |
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+ SamplingMode, SamplingParam, GPS, gpsCI, ## RtreemixGPS |
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+ SimPatterns, SamplingTimes, WaitingTimes, getModel, noDraws, ## RtreemixSim |
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+ fit, bootstrap, likelihoods, gps, confIntGPS, sim, generate, distribution ## other methods |
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+ ) |
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+ |
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+## Functions to be exported |
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+export(Pval.dist, kullback.leibler, L1.dist, cosin.dist, L2.norm, euclidian.dist, rank.cor.dist, ## similarity measures for vectors |
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+ get.tree.levels, comp.models, comp.models.levels, comp.trees, comp.trees.levels, ## similarity measures for tree topologies |
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+ stability.sim ## stability analysis function |
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+ ) |