Browse code

Added information on the plotting function in RtreemixModel-class.Rd

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@69938 bc3139a8-67e5-0310-9ffc-ced21a209358

Jasmina Bogojeska authored on 28/09/2012 10:54:28
Showing 1 changed files

... ...
@@ -152,9 +152,12 @@ Class \code{"RtreemixData"}, directly.
152 152
       mixture model as a directed \code{graphNEL} object.}
153 153
     \item{numTrees}{\code{signature(object = "RtreemixModel")}: A method
154 154
     for obtaining the number of tree components building up the mixture model.}
155
-    \item{plot}{\code{signature(x = "RtreemixModel", y = "missing")}: A method for visualizing the tree components comprising a mutagenetic trees mixture model.  
156
-    The user can also specify the \code{fontSize} (the default value is 8) used for the text labels of the nodes and the edges of the plotted trees. Additionally, one can use the parameter \code{k} to plot a certain tree component from the 
157
-    mixture model.}
155
+    \item{plot}{\code{signature(x = "RtreemixModel", y = "missing")}: A method 
156
+    for visualizing the tree components comprising a mutagenetic trees mixture 
157
+    model. The user can also specify the \code{fontSize} (the default value is 8) 
158
+    used for the text labels of the nodes and the edges of the plotted trees. 
159
+    Additionally, one can use the parameter \code{k} to plot a certain tree 
160
+    component from the mixture model.}
158 161
   }
159 162
 }
160 163
 \references{Learning multiple evolutionary pathways from cross-sectional