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rename inst/doc to vignettes and bump version

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@82468 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 01/11/2013 20:02:13
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 Package: Rtreemix
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 Type: Package
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 Title: Rtreemix: Mutagenetic trees mixture models.
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-Version: 1.25.0
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+Version: 1.25.1
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 Author: Jasmina Bogojeska
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 Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de>
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 Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc.
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similarity index 100%
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rename from inst/doc/ClassDiagram.pdf
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rename to vignettes/ClassDiagram.pdf
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rename from inst/doc/ExtendedVignette.pdf
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rename to vignettes/ExtendedVignette.pdf
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rename from inst/doc/Rtreemix.Rnw
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rename to vignettes/Rtreemix.Rnw
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rename from inst/doc/Rtreemix.bib
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rename to vignettes/Rtreemix.bib
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rename from inst/doc/topologies.pdf
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rename to vignettes/topologies.pdf
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rename from inst/doc/treemix.pat
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rename to vignettes/treemix.pat