git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rtreemix@81253 bc3139a8-67e5-0310-9ffc-ced21a209358
Dan Tenenbaum authored on 07/10/2013 22:46:57
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Package: Rtreemix |
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Type: Package |
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Title: Rtreemix: Mutagenetic trees mixture models. |
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-Version: 1.23.0 |
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+Version: 1.23.1 |
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Author: Jasmina Bogojeska |
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Maintainer: Jasmina Bogojeska <jasmina@mpi-inf.mpg.de> |
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Description: Rtreemix is a package that offers an environment for estimating the mutagenetic trees mixture models from cross-sectional data and using them for various predictions. It includes functions for fitting the trees mixture models, likelihood computations, model comparisons, waiting time estimations, stability analysis, etc. |
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@@ -92,7 +92,7 @@ It should be also pointed out that a text file with a specific format can be use |
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such file is the file \textit{treemix.pat} in the \textit{examples} directory of the package. The text files used to create an \texttt{RtreemixData}
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object should follow the format of this file. Using \textit{treemix.pat} the \texttt{RtreemixData} object is created as follows.
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<<results = hide>>= |
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-ex.data <- new("RtreemixData", File = paste(.path.package(package = "Rtreemix"), "/examples/treemix.pat", sep = ""))
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+ex.data <- new("RtreemixData", File = paste(path.package(package = "Rtreemix"), "/examples/treemix.pat", sep = ""))
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show(ex.data) ## show the RtreemixData object |
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@ |
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One can also create an \texttt{RtreemixData} object by specifying the set of patient profiles as a binary matrix as shown in the code below.
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